Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated |
UNIPROT
DB: UniProtKB |
100.0 | 203.0 | 394 | 7.10e-107 | ggdbv1_87241049 | |
RNA polymerase ECF-type sigma factor n=1 Tax=Anaerolinea thermophila UNI-1 RepID=E8N229_ANATU (db=UNIREF evalue=4.7e-56 bit_score=223.4 identity=55.7 coverage=90.82568807339449) | similarity |
UNIREF
DB: UNIREF |
55.0 | 90.0 | 223 | 4.00e+00 | atm:ANT_29500 |
RNA polymerase ECF-type sigma factor | similarity |
KEGG
DB: KEGG |
55.7 | 201.0 | 220 | 6.30e-55 | atm:ANT_29500 |
seg (db=Seg db_id=seg from=187 to=201) | iprscan |
interpro
DB: Seg |
0.0 | 0.0 | 0 | 0.0 | atm:ANT_29500 |
(db=HMMPfam db_id=PF04542 from=35 to=102 evalue=1.0e-19 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | atm:ANT_29500 |
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=19 to=104 evalue=1.1e-23) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 1.00e+00 | atm:ANT_29500 |
(db=HMMPfam db_id=PF08281 from=143 to=195 evalue=2.5e-13 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 2.00e+00 | atm:ANT_29500 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=9 to=120 evalue=2.6e-27 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 2.00e+00 | atm:ANT_29500 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=30 to=199 evalue=2.7e-46 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 2.00e+00 | atm:ANT_29500 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=134 to=201 evalue=5.3e-15 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 5.00e+00 | atm:ANT_29500 |