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Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

In projects: Knockout_Variovorax_02_2024_K_none_B1_day_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %
Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2
Displaying items 51-100 of 3224 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_3053
Order: Burkholderiales (100%)
3 2366 bp 73.50 8.24 100.93
Knockout_Variovorax_02_2024_K_none_B1_day_6_5969
Genus: Mesorhizobium (66.67%)
3 1344 bp 58.78 3.68 100.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_3046
Class: Alphaproteobacteria (50%)
6 2370 bp 66.41 5.19 100.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_5913
Species: Mesorhizobium plurifarium (50%)
2 1356 bp 66.59 4.09 100.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_2712
Class: Alphaproteobacteria (66.67%)
3 2620 bp 58.78 5.15 100.88
Knockout_Variovorax_02_2024_K_none_B1_day_6_6409
Species: Asticcacaulis benevestitus (50%)
2 1270 bp 60.47 3.78 100.87
Knockout_Variovorax_02_2024_K_none_B1_day_6_5259
Species: BJP_IG2103_Dechloromonas_63_51 (50%)
2 1502 bp 65.38 6.39 100.87
Knockout_Variovorax_02_2024_K_none_B1_day_6_7086
Species: Xanthobacter autotrophicus (100%)
2 1160 bp 62.41 6.08 100.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_4370
Phylum: Proteobacteria (66.67%)
3 1743 bp 65.58 4.73 100.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_7949 2 1056 bp 57.67 3.41 100.85
Knockout_Variovorax_02_2024_K_none_B1_day_6_2007
Genus: Mesorhizobium (100%)
5 3543 bp 67.12 3.81 100.76
Knockout_Variovorax_02_2024_K_none_B1_day_6_3264
Phylum: Proteobacteria (50%)
4 2240 bp 70.71 6.36 100.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_6391
Species: Mesorhizobium sp. LSJC280B00 (50%)
2 1275 bp 67.84 4.12 100.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_4994
Species: Oceanithermus profundus (50%)
2 1564 bp 68.54 3.64 100.70
Knockout_Variovorax_02_2024_K_none_B1_day_6_8486
Species: Shinella sp. DD12 (50%)
2 1001 bp 59.04 6.89 100.70
Knockout_Variovorax_02_2024_K_none_B1_day_6_7185 3 1147 bp 62.07 8.50 100.70
Knockout_Variovorax_02_2024_K_none_B1_day_6_8383 2 1010 bp 61.09 3.27 100.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_4391
Species: Mesorhizobium metallidurans (50%)
2 1734 bp 67.07 3.63 100.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_7928
Species: Ochrobactrum anthropi (50%)
2 1058 bp 58.51 4.40 100.66
Knockout_Variovorax_02_2024_K_none_B1_day_6_7569
Order: Rhizobiales (50%)
4 1100 bp 62.36 4.09 100.64
Knockout_Variovorax_02_2024_K_none_B1_day_6_6084
Class: Alphaproteobacteria (66.67%)
3 1327 bp 66.39 4.75 100.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_6026
Class: Alphaproteobacteria (50%)
4 1336 bp 60.48 6.18 100.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_3623
Species: Nitratireductor indicus (100%)
5 2034 bp 68.63 4.65 100.59
Knockout_Variovorax_02_2024_K_none_B1_day_6_3501
Species: Rhizobium leguminosarum (66.67%)
3 2082 bp 67.68 4.18 100.58
Knockout_Variovorax_02_2024_K_none_B1_day_6_7969
Species: Mesorhizobium sp. LSHC420B00 (50%)
2 1053 bp 67.33 3.99 100.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_7944
Genus: Rhizobium (100%)
3 1056 bp 65.06 4.83 100.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_3852
Species: Azotobacter vinelandii (50%)
2 1945 bp 67.30 5.09 100.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_7807
Species: Novosphingobium resinovorum (66.67%)
3 1074 bp 64.53 2.37 100.56
Knockout_Variovorax_02_2024_K_none_B1_day_6_7771 5 1077 bp 50.42 2.23 100.56
Knockout_Variovorax_02_2024_K_none_B1_day_6_7520
Species: Bosea sp. LC85 (66.67%)
3 1107 bp 63.14 4.47 100.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_6228
Species: Desulfotomaculum reducens (50%)
2 1301 bp 64.87 4.15 100.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_7321
Order: Rhodobacterales (100%)
3 1131 bp 70.56 4.64 100.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_2887
Species: Pseudogulbenkiania ferrooxidans (50%)
2 2495 bp 66.53 8.06 100.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_2373
Species: Sphingobium chinhatense (50%)
2 2964 bp 58.84 4.15 100.51
Knockout_Variovorax_02_2024_K_none_B1_day_6_4822
Genus: Mesorhizobium (100%)
3 1612 bp 68.42 3.91 100.50
Knockout_Variovorax_02_2024_K_none_B1_day_6_5485
Species: Mesorhizobium huakuii (50%)
2 1445 bp 69.07 3.84 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_6521
Species: Bosea sp. LC85 (100%)
3 1248 bp 68.51 4.09 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_8065
Species: Mesorhizobium sp. LSJC269B00 (50%)
2 1042 bp 66.41 3.60 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_2618
Species: Pseudomonas bauzanensis (50%)
2 2720 bp 70.22 5.46 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_7964
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)
2 1054 bp 72.30 4.27 100.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_7790
Phylum: Proteobacteria (66.67%)
3 1075 bp 67.26 3.63 100.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_7735
Species: Bosea sp. LC85 (100%)
2 1081 bp 71.32 4.72 100.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_2941
Class: Betaproteobacteria (66.67%)
3 2455 bp 62.20 5.68 100.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_4180
Phylum: Proteobacteria (66.67%)
3 1813 bp 66.74 5.96 100.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_4830
Species: Agrobacterium tumefaciens (66.67%)
3 1610 bp 65.40 4.84 100.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_6937
Order: Rhizobiales (66.67%)
3 1180 bp 63.31 3.31 100.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_5297
Order: Rhizobiales (66.67%)
3 1494 bp 71.08 5.82 100.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_8477
Species: Alicycliphilus denitrificans (50%)
2 1001 bp 71.53 8.24 100.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_8446
Species: Alcaligenes faecalis (100%)
2 1004 bp 69.42 8.37 100.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_8346
Species: Klebsiella pneumoniae (50%)
2 1013 bp 56.66 2.81 100.40
Displaying items 51-100 of 3224 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.