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Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

In projects: Knockout_Variovorax_02_2024_K_none_B1_day_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %
Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2
Displaying items 101-150 of 3224 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_8030
Species: RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated (100%)
2 1046 bp 67.50 4.02 100.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_7987
Species: Octadecabacter arcticus (100%)
2 1052 bp 65.87 3.56 100.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_7887
Class: Gammaproteobacteria (66.67%)
3 1064 bp 71.90 3.38 100.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_7873
Species: Mesorhizobium sp. L2C084A000 (50%)
2 1067 bp 67.76 4.22 100.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_3910
Class: Gammaproteobacteria (66.67%)
3 1919 bp 68.26 7.50 100.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_2905
Domain: Bacteria (66.67%)
3 2478 bp 66.79 4.24 100.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_4529
Species: uncultured bacterium lac153 (66.67%)
3 1686 bp 72.24 5.87 100.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_7252
Species: Ochrobactrum anthropi (50%)
2 1139 bp 70.32 4.35 100.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_1879
Order: Rhizobiales (66.67%)
6 3800 bp 59.39 5.25 100.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_6927
Genus: Mesorhizobium (100%)
3 1181 bp 64.94 4.06 100.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_6851
Species: Mesorhizobium sp. L2C084A000 (100%)
2 1193 bp 64.71 3.77 100.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_6800
Species: Paracoccus aminophilus (100%)
2 1202 bp 65.47 5.12 100.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_6783
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated (100%)
2 1205 bp 67.88 4.23 100.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_1932
Species: Skermanella stibiiresistens (100%)
4 3696 bp 67.37 5.32 100.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_6146
Species: RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated (50%)
2 1313 bp 69.84 5.03 100.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_8369
Species: Mesorhizobium sp. LNJC399B00 (50%)
2 1011 bp 68.05 3.71 100.30
Knockout_Variovorax_02_2024_K_none_B1_day_6_5901
Species: Mesorhizobium sp. SOD10 (50%)
2 1358 bp 67.23 4.20 100.30
Knockout_Variovorax_02_2024_K_none_B1_day_6_8235
Species: RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated (50%)
2 1023 bp 62.76 5.72 100.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_8242
Species: Aquamicrobium defluvii (50%)
2 1023 bp 66.57 2.93 100.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_5795
Species: Bosea sp. LC85 (100%)
3 1382 bp 68.89 4.12 100.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_8106
Species: Ensifer adhaerens (100%)
2 1038 bp 66.09 3.47 100.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_2025
Species: BJP_08E140C01_10KDA_Methylophilales_47_88 (50%)
4 3515 bp 53.77 6.10 100.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_5588 3 1424 bp 66.15 4.95 100.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_3397
Order: Rhizobiales (66.67%)
3 2148 bp 64.94 3.56 100.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_7773
Species: RBG_16_Chloroflexi_54_18_curated (50%)
2 1077 bp 68.43 6.69 100.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_3349
Order: Rhizobiales (66.67%)
3 2178 bp 64.51 5.03 100.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_7445
Species: Microvirga lotononidis (50%)
2 1116 bp 69.80 5.11 100.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_7389
Species: Bradyrhizobium diazoefficiens (50%)
2 1122 bp 66.93 3.74 100.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_7275
Species: Achromobacter xylosoxidans (50%)
2 1137 bp 70.01 4.49 100.26
Knockout_Variovorax_02_2024_K_none_B1_day_6_7132
Species: Mesorhizobium opportunistum (50%)
2 1155 bp 69.26 2.60 100.26
Knockout_Variovorax_02_2024_K_none_B1_day_6_3787
Genus: Mesorhizobium (66.67%)
3 1972 bp 64.50 4.41 100.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_6809
Species: Pimelobacter simplex (50%)
2 1200 bp 72.00 6.13 100.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_1343
Phylum: Proteobacteria (57.14%)
7 5602 bp 59.30 9.61 100.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_2531
Species: Mesorhizobium sp. ORS3324 (50%)
4 2810 bp 66.83 4.43 100.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_4835
Order: Burkholderiales (50%)
4 1607 bp 64.97 5.41 100.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_3504
Phylum: Proteobacteria (66.67%)
3 2080 bp 60.72 5.19 100.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_4611
Species: Brevundimonas sp. KM4 (100%)
2 1664 bp 63.04 4.42 100.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_4337
Species: Hoeflea sp. IMCC20628 (50%)
2 1754 bp 61.23 4.87 100.23
Knockout_Variovorax_02_2024_K_none_B1_day_6_4263
Phylum: Proteobacteria (66.67%)
3 1784 bp 63.85 3.87 100.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_5968
Species: CSP1_6_Rokubacteria (50%)
2 1344 bp 64.36 4.46 100.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_5954
Species: Rhizobium sp. CF122 (50%)
2 1347 bp 71.12 4.34 100.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_5835
Species: Mesorhizobium sp. LNHC252B00 (50%)
2 1374 bp 68.34 3.49 100.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_5730
Order: Rhizobiales (66.67%)
3 1392 bp 68.97 5.28 100.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_3835
Species: Rhodomicrobium udaipurense (50%)
2 1952 bp 61.17 5.07 100.21
Knockout_Variovorax_02_2024_K_none_B1_day_6_8430
Species: Acidovorax temperans (50%)
2 1006 bp 68.69 5.52 100.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_8360
Species: Brevundimonas diminuta (50%)
2 1012 bp 66.11 2.96 100.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_8287
Species: Catenulispora acidiphila (50%)
2 1018 bp 56.88 3.83 100.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_8268
Species: Mesorhizobium sp. LSHC422A00 (50%)
2 1021 bp 66.70 4.41 100.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_7996
Species: Bosea sp. LC85 (100%)
2 1051 bp 67.08 4.28 100.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_4943
Species: Oligotropha carboxidovorans (66.67%)
3 1578 bp 64.77 5.13 100.19
Displaying items 101-150 of 3224 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.