ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 151-200 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_7907 Species: Xanthobacter autotrophicus (100%)	2	1060 bp	64.43	4.53	100.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_7908 Species: Rhizobium sp. YS-1r (50%)	2	1060 bp	69.62	5.24	100.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_7857 Species: Rhizobium sp. Pop5 (50%)	2	1069 bp	64.45	3.93	100.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_7739 Species: Mesorhizobium plurifarium (50%)	2	1081 bp	68.92	4.30	100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_7557 Species: Bosea sp. LC85 (100%)	2	1102 bp	67.51	2.72	100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_7494 Species: Skermanella stibiiresistens (50%)	2	1111 bp	63.73	3.65	100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_7357 Species: Bosea sp. LC85 (100%)	2	1126 bp	71.05	4.00	100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_7339 Species: Bosea sp. LC85 (50%)	2	1129 bp	64.57	3.19	100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_7318 Genus: Mesorhizobium (100%)	3	1132 bp	67.84	4.37	100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_7294	2	1135 bp	54.27	4.36	100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_2459 Species: Advenella kashmirensis (66.67%)	3	2875 bp	62.05	8.14	100.17
Knockout_Variovorax_02_2024_K_none_B1_day_6_1753 Species: Verminephrobacter eiseniae (66.67%)	3	4076 bp	63.03	6.18	100.17
Knockout_Variovorax_02_2024_K_none_B1_day_6_6996 Species: Microvirga aerilata (100%)	2	1171 bp	61.49	4.36	100.17
Knockout_Variovorax_02_2024_K_none_B1_day_6_6818 Genus: Mesorhizobium (100%)	3	1198 bp	68.78	4.38	100.17
Knockout_Variovorax_02_2024_K_none_B1_day_6_6821 Species: Grimontia hollisae (100%)	2	1198 bp	65.69	4.88	100.17
Knockout_Variovorax_02_2024_K_none_B1_day_6_6751 Species: Bosea sp. LC85 (50%)	2	1210 bp	69.17	3.35	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_6713 Species: Afipia felis (100%)	2	1216 bp	59.87	3.21	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_6714 Species: Rhodovulum sp. PH10 (50%)	2	1216 bp	64.88	2.96	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_6549 Species: Novosphingobium sp. MD-1 (50%)	2	1243 bp	67.50	3.50	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_6551 Species: Rhodobacteraceae bacterium PD-2 (100%)	2	1243 bp	66.13	4.22	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_6423 Species: Mesorhizobium sp. LSHC420B00 (100%)	2	1267 bp	69.06	3.55	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_3906 Species: marine sediment metagenome (50%)	2	1920 bp	64.17	4.84	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_3900 Species: Aquamicrobium defluvii (66.67%)	3	1923 bp	66.09	6.63	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_3884 Species: Neorhizobium galegae (50%)	2	1932 bp	68.58	5.12	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_6310 Species: Mesorhizobium sp. LNHC209A00 (50%)	2	1288 bp	69.95	3.49	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_6211 Species: Conexibacter woesei (100%)	2	1303 bp	66.23	4.14	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6057 Species: Mesorhizobium amorphae (50%)	2	1330 bp	71.05	3.83	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6065 Species: Bosea sp. LC85 (100%)	2	1330 bp	65.64	3.16	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6045 Species: Thermincola potens (50%)	2	1333 bp	67.44	4.73	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6022 Species: Rhizobium sp. Pop5 (50%)	2	1336 bp	68.56	5.39	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_5881 Species: Bradyrhizobium japonicum (50%)	2	1363 bp	53.26	4.40	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_3575 Species: Sanguibacter keddieii (50%)	2	2055 bp	73.14	9.27	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_5578 Species: Rhodobacteraceae bacterium PD-2 (50%)	2	1426 bp	67.60	3.68	100.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_5525 Species: Mesorhizobium ciceri (50%)	2	1438 bp	65.65	4.07	100.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_5374 Species: Agrobacterium albertimagni (50%)	2	1474 bp	64.86	5.70	100.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_3211 Species: Aquamicrobium defluvii (50%)	4	2277 bp	67.11	5.73	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_5165 Species: Thauera sp. 27 (50%)	2	1522 bp	64.13	3.25	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_3185 Species: Roseivivax isoporae (50%)	2	2289 bp	64.31	4.59	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_4919 Species: Acetonema longum (50%)	2	1582 bp	66.56	3.79	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_8092 Species: Mesorhizobium plurifarium (50%)	2	1582 bp	69.79	4.36	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_4917 Species: Aquamicrobium defluvii (100%)	2	1585 bp	63.34	3.97	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_4850 Species: Aquamicrobium defluvii (100%)	2	1603 bp	70.43	5.24	100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_4785 Species: Mesorhizobium sp. ORS3359 (100%)	2	1618 bp	71.76	4.08	100.12
Knockout_Variovorax_02_2024_K_none_B1_day_6_4706 Species: Rhizobium freirei (50%)	2	1636 bp	66.32	5.04	100.12
Knockout_Variovorax_02_2024_K_none_B1_day_6_8485 Species: Nocardioides sp. CF8 (50%)	2	1001 bp	66.33	5.39	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8422 Species: Kineococcus radiotolerans (50%)	2	1007 bp	68.22	4.62	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8353 Species: Rhizobium sp. YS-1r (50%)	2	1013 bp	67.72	4.59	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8283 Species: Bosea sp. LC85 (100%)	2	1019 bp	63.98	3.53	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8249 Species: Roseovarius nubinhibens (50%)	2	1022 bp	64.58	2.64	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8056 Species: Bosea sp. LC85 (100%)	2	1043 bp	69.13	7.33	100.10

Displaying items 151-200 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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