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NECEvent2014_2_3_scaffold_87

Alias: 172_003_scaffold_87

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_87_1
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(354..896)
-----------------
DNA (543bp)
protein (181aa)
Uncharacterized protein {ECO:0000313|EMBL:EGX73443.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
NECEvent2014_2_3_scaffold_87_2
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1175..1846)
-----------------
DNA (672bp)
protein (224aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridium difficile RepID=G6BU13_CLODI rbh
Uncharacterized protein {ECO:0000313|EMBL:CDC75402.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium
Predicted transcription factor, homolog of eukaryotic MBF1
NECEvent2014_2_3_scaffold_87_3
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2553..3404
-----------------
DNA (852bp)
protein (284aa)
Replication initiation factor family protein n=1 Tax=Clostridium difficile Y231 RepID=T4EC69_CLODI rbh
Uncharacterized protein {ECO:0000313|EMBL:EGG87032.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Putative phage replication protein RstA
NECEvent2014_2_3_scaffold_87_4
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3404..3607
-----------------
DNA (204bp)
protein (68aa)
Excisionase from transposon Tn916 n=19 Tax=Bacteria RepID=D4MW18_9FIRM
Excisionase from transposon Tn916.
Excisionase {ECO:0000313|EMBL:ERT24258.1}; TaxID=1391469 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis BM4654.;"
NECEvent2014_2_3_scaffold_87_5
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3695..4888
-----------------
DNA (1194bp)
protein (398aa)
Site-specific recombinase, phage integrase family n=3 Tax=Clostridiales RepID=A5KNK3_9FIRM rbh
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDK23941.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus
Site-specific recombinase XerD
NECEvent2014_2_3_scaffold_87_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5127..6254
-----------------
DNA (1128bp)
protein (376aa)
Diguanylate cyclase domain protein n=50 Tax=Clostridium difficile RepID=T2UW16_CLODI rbh
putative signaling protein
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQG74481.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
NECEvent2014_2_3_scaffold_87_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6508..7170
-----------------
DNA (663bp)
protein (221aa)
B3/4 domain protein n=147 Tax=Clostridium difficile RepID=T3GAR9_CLODC rbh
putative tRNA-binding protein
B3/4 domain-containing protein {ECO:0000313|EMBL:CKG87928.1}; Putative tRNA-binding protein {ECO:0000313|EMBL:CEJ99602.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostr
NECEvent2014_2_3_scaffold_87_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7541..8950
-----------------
DNA (1410bp)
protein (470aa)
Uncharacterized protein n=114 Tax=Clostridium difficile RepID=Q184F4_CLOD6 rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL23311.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_87_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9065..9340
-----------------
DNA (276bp)
protein (92aa)
Uncharacterized protein n=194 Tax=Clostridium difficile RepID=T3GCB7_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE60220.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_87_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9970..10281
-----------------
DNA (312bp)
protein (104aa)
Uncharacterized protein n=205 Tax=Clostridium difficile RepID=T3G977_CLODC
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:EQG74555.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_87_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10283..12208
-----------------
DNA (1926bp)
protein (642aa)
atpI; V-type sodium ATP synthase subunit I (EC:3.6.3.15)
V-type ATPase subunit I family protein n=66 Tax=Clostridium difficile RepID=T3GAW6_CLODC rbh
V-type ATP synthase subunit I {ECO:0000256|RuleBase:RU361189}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_87_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12211..12702
-----------------
DNA (492bp)
protein (164aa)
V-type ATP synthase subunit K (EC:3.6.3.14)
V-type ATP synthase subunit K {ECO:0000313|EMBL:CCL31205.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CCL31205.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae;
V-type sodium ATP synthase subunit K n=219 Tax=Clostridium difficile RepID=C9XPV9_CLODC rbh
NECEvent2014_2_3_scaffold_87_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12754..13317
-----------------
DNA (564bp)
protein (188aa)
V-type ATP synthase subunit E n=202 Tax=Clostridium difficile RepID=VATE_CLOD6 rbh
V-type sodium ATP synthase subunit E
V-type proton ATPase subunit E {ECO:0000256|HAMAP-Rule:MF_00311}; V-ATPase subunit E {ECO:0000256|HAMAP-Rule:MF_00311}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostr
NECEvent2014_2_3_scaffold_87_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13332..14309
-----------------
DNA (978bp)
protein (326aa)
V-type ATP synthase subunit C (EC:3.6.3.14)
V-type ATP synthase subunit C {ECO:0000313|EMBL:CCL31203.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CCL31203.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae;
ATP synthase (C/AC39) subunit n=189 Tax=Clostridium difficile RepID=C9XPV7_CLODC rbh
NECEvent2014_2_3_scaffold_87_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14302..14619
-----------------
DNA (318bp)
protein (106aa)
V-type ATP synthase subunit F (EC:3.6.3.14)
V-type ATP synthase subunit F {ECO:0000313|EMBL:CCL31202.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CCL31202.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae;
V-type sodium ATP synthase subunit G n=209 Tax=Clostridium difficile RepID=C9XPV6_CLODC
NECEvent2014_2_3_scaffold_87_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14736..16514
-----------------
DNA (1779bp)
protein (593aa)
atpA; V-type ATP synthase subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; TaxID=1151334 species="Bacteria
V-type ATP synthase alpha chain n=206 Tax=Clostridium difficile RepID=VATA_CLOD6 rbh
NECEvent2014_2_3_scaffold_87_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16511..17884
-----------------
DNA (1374bp)
protein (458aa)
V-type ATP synthase subunit B (EC:3.6.3.14)
V-type ATP synthase beta chain n=220 Tax=Clostridium difficile RepID=VATB_CLOD6 rbh
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostr
NECEvent2014_2_3_scaffold_87_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17890..18558
-----------------
DNA (669bp)
protein (223aa)
V-type ATP synthase subunit D (EC:3.6.3.14)
V-type ATP synthase subunit D n=162 Tax=Clostridium difficile RepID=VATD_CLOD6 rbh
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrep
NECEvent2014_2_3_scaffold_87_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18835..19884
-----------------
DNA (1050bp)
protein (350aa)
2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding family protein n=6 Tax=Clostridium difficile RepID=T3G829_CLODC rbh
ABC-type transport system, iron-familyextracellular solute-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:CKG88248.1}; ABC-type transport system, iron-familyextracellular solute-binding protein {ECO:0000313|EMBL:CEJ99590.1}; TaxID=1496 species="B
NECEvent2014_2_3_scaffold_87_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19980..20126
-----------------
DNA (147bp)
protein (49aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=T3G965_CLODC
ABC-type transport system,ATP-binding protein
ABC-type transport system,ATP-binding protein {ECO:0000313|EMBL:CEJ99519.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pep
NECEvent2014_2_3_scaffold_87_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20119..21477)
-----------------
DNA (1359bp)
protein (453aa)
Recombinase family protein n=10 Tax=root RepID=T3GAV5_CLODC rbh
putative phage site-specific integrase
Phage site-specific recombinase {ECO:0000313|EMBL:CKG88290.1}; Putative phage site-specific integrase {ECO:0000313|EMBL:CEJ99589.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales
NECEvent2014_2_3_scaffold_87_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21542..22015)
-----------------
DNA (474bp)
protein (158aa)
Uncharacterized protein n=10 Tax=root RepID=T3GD89_CLODC rbh
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CAJ69843.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffici
NECEvent2014_2_3_scaffold_87_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22033..22572)
-----------------
DNA (540bp)
protein (180aa)
Helix-turn-helix family protein n=1 Tax=Clostridium difficile Y266 RepID=T4FA44_CLODI rbh
Transcriptional regulator, HTH-type
Cro/CI family transcriptional regulator {ECO:0000313|EMBL:CKG88332.1}; Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CEJ99587.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostrid
NECEvent2014_2_3_scaffold_87_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22642..22863
-----------------
DNA (222bp)
protein (74aa)
Helix-turn-helix family protein n=10 Tax=root RepID=T3G825_CLODC
Transcriptional regulator, Phage-type
Transcriptional regulator, Phage-type {ECO:0000313|EMBL:CAJ69841.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclos
NECEvent2014_2_3_scaffold_87_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22911..23705
-----------------
DNA (795bp)
protein (265aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=T3G960_CLODC rbh
hypothetical protein
Phage anti-repressor {ECO:0000313|EMBL:CKG88371.1}; Putative phage protein {ECO:0000313|EMBL:CEJ99585.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pe
NECEvent2014_2_3_scaffold_87_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23771..23959
-----------------
DNA (189bp)
protein (63aa)
Uncharacterized protein n=10 Tax=root RepID=T3GAV0_CLODC
Hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG88407.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99584.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
NECEvent2014_2_3_scaffold_87_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23934..24161
-----------------
DNA (228bp)
protein (76aa)
Putative phage protein n=4 Tax=Clostridium difficile RepID=T3IK57_CLODI
Putative phage protein {ECO:0000313|EMBL:CCL00291.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
putative phage protein
NECEvent2014_2_3_scaffold_87_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24261..24578
-----------------
DNA (318bp)
protein (106aa)
Uncharacterized protein n=9 Tax=root RepID=T3GCE7_CLODC
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CAJ69837.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffici
NECEvent2014_2_3_scaffold_87_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24664..25173
-----------------
DNA (510bp)
protein (170aa)
Siphovirus Gp157 family protein n=4 Tax=Clostridium difficile RepID=T3G821_CLODC rbh
bacteriophage resistance protein
Putative bacteriophage resistance protein {ECO:0000313|EMBL:CEJ99581.1}; Siphovirus Gp157 {ECO:0000313|EMBL:CKG88462.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrep
NECEvent2014_2_3_scaffold_87_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25183..25773
-----------------
DNA (591bp)
protein (197aa)
ERF superfamily protein n=20 Tax=Clostridium difficile RepID=T3G954_CLODC rbh
putative phage essential recombination functionprotein
Putative phage essential recombination function protein {ECO:0000313|EMBL:CAJ69835.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;"
Displaying items 1-30 of 79 in total

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