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NECEvent2014_4_4_scaffold_22

Alias: 174_004_scaffold_22

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_4_scaffold_22_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46..660
DNA (615bp) protein (205aa)
Uncharacterized protein n=7 Tax=Clostridium perfringens RepID=Q8XJT7_CLOPE rbh
DNA polymerase III subunit epsilon
Putative DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:EIA16517.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pe
NECEvent2014_4_4_scaffold_22_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(697..1026)
DNA (330bp) protein (110aa)
Single-stranded DNA-binding protein n=9 Tax=Clostridium perfringens RepID=H7CX63_CLOPF
single-strand DNA binding protein
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070, ECO:0000256|RuleBase:RU000524}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
NECEvent2014_4_4_scaffold_22_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1310..2740)
DNA (1431bp) protein (477aa)
purB; adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
Adenylosuccinate lyase n=8 Tax=Clostridium perfringens RepID=H7CX64_CLOPF rbh
NECEvent2014_4_4_scaffold_22_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2983..3243)
DNA (261bp) protein (87aa)
Phosphocarrier protein (Hpr) n=11 Tax=Clostridium perfringens RepID=H7CX65_CLOPF
hpr; phosphocarrier protein
Phosphocarrier protein {ECO:0000313|EMBL:BAB81375.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 /
NECEvent2014_4_4_scaffold_22_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3338..4531)
DNA (1194bp) protein (398aa)
Aspartate aminotransferase {ECO:0000313|EMBL:EIA16521.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EIA16521.1};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
aspC; aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase n=2 Tax=Clostridium perfringens RepID=H7CX66_CLOPF rbh
NECEvent2014_4_4_scaffold_22_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4684..4944)
DNA (261bp) protein (87aa)
Stage V sporulation protein S n=11 Tax=Clostridium perfringens RepID=H7CX67_CLOPF
spoVS; stage V sporulation protein S
Stage V sporulation protein S {ECO:0000313|EMBL:EDT13823.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str
NECEvent2014_4_4_scaffold_22_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5162..6697)
DNA (1536bp) protein (512aa)
Ribonuclease Y {ECO:0000255|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000255|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00335};; TaxID=195102 species="Bacteria; Firmicutes; Clostridi
Ribonuclease Y n=7 Tax=Clostridium perfringens RepID=RNY_CLOP1 rbh
phosphodiesterase
NECEvent2014_4_4_scaffold_22_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7045..8103)
DNA (1059bp) protein (353aa)
Protein RecA n=9 Tax=Clostridium perfringens RepID=RECA_CLOP1 rbh
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=451756 species="Bacteria; Firmicute
NECEvent2014_4_4_scaffold_22_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8239..8829)
DNA (591bp) protein (197aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=7 Tax=Clostridium perfringens RepID=H7CX70_CLOPF rbh
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EIA16525.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
NECEvent2014_4_4_scaffold_22_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8813..10150)
DNA (1338bp) protein (446aa)
Ribosomal protein S12 methylthiotransferase RimO n=9 Tax=Clostridium perfringens RepID=RIMO_CLOP1 rbh
tRNA modifying protein
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
NECEvent2014_4_4_scaffold_22_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10219..12609)
DNA (2391bp) protein (797aa)
DNA translocase FtsK n=2 Tax=Clostridium perfringens RepID=Q0TPS7_CLOP1 rbh
ftsK; DNA translocase FtsK
DNA translocase FtsK {ECO:0000313|EMBL:EDT22751.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 36
NECEvent2014_4_4_scaffold_22_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12741..13430)
DNA (690bp) protein (230aa)
clpP; Clp protease (EC:3.4.21.92)
Putative endopeptidase {ECO:0000313|EMBL:ABG87261.1}; EC=3.4.21.- {ECO:0000313|EMBL:ABG87261.1};; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
Clp protease n=4 Tax=Clostridium perfringens RepID=B1BG34_CLOPF rbh
NECEvent2014_4_4_scaffold_22_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13484..14680)
DNA (1197bp) protein (399aa)
aspartate kinase I (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
Aspartokinase n=7 Tax=Clostridium perfringens RepID=H7CX74_CLOPF rbh
NECEvent2014_4_4_scaffold_22_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14694..14969)
DNA (276bp) protein (92aa)
PRC-barrel domain-containing protein n=11 Tax=Clostridium perfringens RepID=H7CX75_CLOPF
PRC-barrel domain-containing protein
PRC-barrel domain protein {ECO:0000313|EMBL:EDT26228.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str.
NECEvent2014_4_4_scaffold_22_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15104..17212)
DNA (2109bp) protein (703aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=451756
Polyribonucleotide nucleotidyltransferase n=3 Tax=Clostridium perfringens RepID=PNP_CLOPE rbh
pnpA; polynucleotide phosphorylase
NECEvent2014_4_4_scaffold_22_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17304..17567)
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=11 Tax=Clostridium perfringens RepID=RS15_CLOP1
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
NECEvent2014_4_4_scaffold_22_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17683..18612)
DNA (930bp) protein (310aa)
ribF; bifunctional riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=451754 species="Bacteria; Firmicutes;
Riboflavin biosynthesis protein RibF n=3 Tax=Clostridium perfringens RepID=Q0TPS1_CLOP1 rbh
NECEvent2014_4_4_scaffold_22_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18616..19500)
DNA (885bp) protein (295aa)
tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01080}; Short=Psi55 synthas
tRNA pseudouridine synthase B n=2 Tax=Clostridium perfringens RepID=TRUB_CLOPE rbh
truB; tRNA pseudouridine synthase B
NECEvent2014_4_4_scaffold_22_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19504..20457)
DNA (954bp) protein (318aa)
DHH subfamily 1 protein n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SSD6_CLOPS rbh
DHH subfamily 1 protein
DHH subfamily 1 protein {ECO:0000313|EMBL:ABG86219.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM1
NECEvent2014_4_4_scaffold_22_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20461..20811)
DNA (351bp) protein (117aa)
Ribosome-binding factor A n=10 Tax=Clostridium perfringens RepID=RBFA_CLOP1
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
NECEvent2014_4_4_scaffold_22_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20833..22872)
DNA (2040bp) protein (680aa)
Translation initiation factor IF-2 n=9 Tax=Clostridium perfringens RepID=IF2_CLOP1 rbh
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
NECEvent2014_4_4_scaffold_22_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22903..23205)
DNA (303bp) protein (101aa)
Ribosomal protein L7Ae family protein n=7 Tax=Clostridium perfringens RepID=H7CX83_CLOPF
ribosomal protein L7Ae family protein
Ribosomal protein, L7Ae family {ECO:0000313|EMBL:EDT13816.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E st
NECEvent2014_4_4_scaffold_22_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23198..23464)
DNA (267bp) protein (89aa)
Uncharacterized protein n=8 Tax=Clostridium perfringens RepID=H7CX84_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB81394.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_4_4_scaffold_22_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23492..24592)
DNA (1101bp) protein (367aa)
Transcription elongation factor NusA n=7 Tax=Clostridium perfringens RepID=H7CX85_CLOPF rbh
nusA; transcription elongation factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
NECEvent2014_4_4_scaffold_22_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24612..25076)
DNA (465bp) protein (155aa)
Ribosome maturation factor RimP n=7 Tax=Clostridium perfringens RepID=RIMP_CLOP1 rbh
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
NECEvent2014_4_4_scaffold_22_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25309..29658)
DNA (4350bp) protein (1450aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=883064 species="Bacteria; Firmicut
polC; DNA polymerase III PolC (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CS27_CLOPF rbh
NECEvent2014_4_4_scaffold_22_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29736..30785)
DNA (1050bp) protein (350aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS0
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=3 Tax=Clostridium perfringens RepID=B1RIH6_CLOPF rbh
NECEvent2014_4_4_scaffold_22_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30805..31812)
DNA (1008bp) protein (336aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
Uncharacterized protein n=1 Tax=Clostridium perfringens F262 RepID=H7CX89_CLOPF rbh
hypothetical protein
NECEvent2014_4_4_scaffold_22_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31824..32978)
DNA (1155bp) protein (385aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267) rbh
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQ62_CLOPF rbh
NECEvent2014_4_4_scaffold_22_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33310..34104)
DNA (795bp) protein (265aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
Phosphatidate cytidylyltransferase n=5 Tax=Clostridium perfringens RepID=B1BG16_CLOPF rbh
Displaying items 1-30 of 113 in total

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