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NECEvent2014_5_2_scaffold_9

Alias: 175_001_scaffold_9

Search features with annotation key words

Displaying items 1-30 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_2_scaffold_9_1
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

333..1691
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2T1_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH97886.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
xerC; site-specific tyrosine recombinase XerC
NECEvent2014_5_2_scaffold_9_2
unknown

Not on your lists

comp(1725..1988)
DNA (264bp) protein (88aa)

This feature has no annotations

NECEvent2014_5_2_scaffold_9_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2257..2826)
DNA (570bp) protein (190aa)
Putative lipoprotein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UUG2_CLOBO
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AIY83626.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
NECEvent2014_5_2_scaffold_9_4
unknown

Not on your lists

comp(2892..3074)
DNA (183bp) protein (61aa)

This feature has no annotations

NECEvent2014_5_2_scaffold_9_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3144..3557)
DNA (414bp) protein (138aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TIB3_CLOBB
hypothetical protein
Protein containing Zn-finger domain {ECO:0000313|EMBL:CDH90722.1}; Uncharacterized protein {ECO:0000313|EMBL:ACD24029.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostri
NECEvent2014_5_2_scaffold_9_6
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3715..4320
DNA (606bp) protein (202aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1294142 species="Bacteria; Firmic
LexA repressor n=1 Tax=Clostridium intestinale URNW RepID=U2PVW8_9CLOT rbh
LexA repressor
NECEvent2014_5_2_scaffold_9_7
Pontibacillus chungwhensis, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4382..4969
DNA (588bp) protein (196aa)
Uncharacterized protein {ECO:0000313|EMBL:KGP91338.1}; TaxID=1385513 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Pontibacillus.;" source="Pontibacillus chungwhensis BH030062.;"
NECEvent2014_5_2_scaffold_9_8
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5005..6288)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3Q1_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH97890.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
aluminum resistance protein
NECEvent2014_5_2_scaffold_9_9
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6365..6610)
DNA (246bp) protein (82aa)
Protein hfq n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2T6_9CLOT
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
hfq; RNA chaperone Hfq
NECEvent2014_5_2_scaffold_9_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6654..7583)
DNA (930bp) protein (310aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_0018
miaA; tRNA dimethylallyltransferase MiaA (EC:2.5.1.75)
UPI0003D682D0 related cluster n=1 Tax=unknown RepID=UPI0003D682D0 rbh
NECEvent2014_5_2_scaffold_9_11
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7599..9452)
DNA (1854bp) protein (618aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FM92_9CLOT rbh
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
mutL; DNA mismatch repair MutL family protein
NECEvent2014_5_2_scaffold_9_12
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9466..12168)
DNA (2703bp) protein (901aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridium chauvoei JF4335 RepID=S6ER99_9CLOT rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
mutS; DNA mismatch repair protein MutS
NECEvent2014_5_2_scaffold_9_13
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12484..12828
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98071.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
macrophage migration inhibitory factor
NECEvent2014_5_2_scaffold_9_14
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12909..13778)
DNA (870bp) protein (290aa)
wrbA; NAD(P)H dehydrogenase (EC:1.6.5.2)
Flavodoxin-like protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y3E6_9FIRM rbh
Flavodoxin-like protein {ECO:0000313|EMBL:EEF69510.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformi
NECEvent2014_5_2_scaffold_9_15
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13799..14701)
DNA (903bp) protein (301aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VLF1_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KGJ50808.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
MarR family transcriptional regulator
NECEvent2014_5_2_scaffold_9_16
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14834..18085)
DNA (3252bp) protein (1084aa)
SWI/SNF family helicase n=2 Tax=Clostridium botulinum B RepID=B2TMM4_CLOBB rbh
Putative helicase {ECO:0000313|EMBL:CDH90737.1}; SWI/SNF family helicase {ECO:0000313|EMBL:ACD23929.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridi
SWI/SNF family helicase
NECEvent2014_5_2_scaffold_9_17
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18332..18700
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Clostridium sp. JC122 RepID=UPI00028900C5
Uncharacterized protein {ECO:0000313|EMBL:CDB15920.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein
NECEvent2014_5_2_scaffold_9_18
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18713..19513)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Clostridium sp. JC122 RepID=UPI00028A1724
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM70435.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
NECEvent2014_5_2_scaffold_9_19
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19516..20229)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Clostridium sp. JC122 RepID=UPI000287B95D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM70436.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
NECEvent2014_5_2_scaffold_9_20
unknown

Not on your lists

comp(20294..21364)
DNA (1071bp) protein (357aa)

This feature has no annotations

NECEvent2014_5_2_scaffold_9_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21480..22814)
DNA (1335bp) protein (445aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
(Dimethylallyl)adenosine tRNA methylthiotransferase miaB n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3P4_9CLOT rbh
miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB
NECEvent2014_5_2_scaffold_9_22
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22986..28049)
DNA (5064bp) protein (1688aa)
F5/8 type C domain protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C411_9FIRM rbh
F5/8 type C domain protein {ECO:0000313|EMBL:EDS74395.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clos
glycosyl hydrolase
NECEvent2014_5_2_scaffold_9_23
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28302..28694)
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5F9N1_CLOK5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ23638.1}; TaxID=431943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain ATCC 8
NECEvent2014_5_2_scaffold_9_24
unknown

Not on your lists

comp(28791..28976)
DNA (186bp) protein (62aa)

This feature has no annotations

NECEvent2014_5_2_scaffold_9_25
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28997..29740)
DNA (744bp) protein (248aa)
Short C-terminal domain protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CQX0_CLOSO
Uncharacterised protein {ECO:0000313|EMBL:CEN86601.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
NECEvent2014_5_2_scaffold_9_26
Treponema phagedenis, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

29906..30322
DNA (417bp) protein (139aa)
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1D237_9FIRM
NC domain protein (Modular protein) {ECO:0000313|EMBL:CEM60890.1}; TaxID=162 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema phagedenis.;"
PspA/IM30 family protein
NECEvent2014_5_2_scaffold_9_27
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30417..30764)
DNA (348bp) protein (116aa)
urocanate reductase precursor (EC:1.3.99.33)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CJC5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR27281.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
NECEvent2014_5_2_scaffold_9_28
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30780..32204)
DNA (1425bp) protein (475aa)
fumarate reductase flavoprotein subunit (EC:1.3.5.4)
Fumarate reductase flavoprotein n=1 Tax=Clostridium intestinale URNW RepID=U2NHX6_9CLOT rbh
Fumarate reductase flavoprotein {ECO:0000313|EMBL:ERK28738.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale UR
NECEvent2014_5_2_scaffold_9_29
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32297..33001)
DNA (705bp) protein (235aa)
Transcriptional regulatory protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CD52_9CLOT
Transcriptional regulatory protein {ECO:0000256|PIRNR:PIRNR006171}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagofo
malR3; transcriptional regulatory protein MalR
NECEvent2014_5_2_scaffold_9_30
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33016..34602)
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGT4_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH98311.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
dpiB; sensor kinase dpiB
Displaying items 1-30 of 119 in total

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