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NECEvent2014_6_5_scaffold_1071

Alias: 176_005_scaffold_1071

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_5_scaffold_1071_1
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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184..552
DNA (369bp) protein (123aa)
UPF0102 protein ClosIBUN22A_CONTIG150g03124 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridiu
hypothetical protein
NECEvent2014_6_5_scaffold_1071_2
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(607..1428)
DNA (822bp) protein (274aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
rnhB; ribonuclease HII (EC:3.1.26.4)
NECEvent2014_6_5_scaffold_1071_3
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1415..2296)
DNA (882bp) protein (294aa)
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
rbgA; ribosome biogenesis GTPase A
NECEvent2014_6_5_scaffold_1071_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2607..2957)
DNA (351bp) protein (117aa)
50S ribosomal protein L19 {ECO:0000313|EMBL:KHD16748.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rplS; 50S ribosomal protein L19
NECEvent2014_6_5_scaffold_1071_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3091..3810)
DNA (720bp) protein (240aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD (EC:2.1.1.228)
NECEvent2014_6_5_scaffold_1071_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3800..4300)
DNA (501bp) protein (167aa)
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
rimM; ribosome maturation factor RimM
NECEvent2014_6_5_scaffold_1071_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4516..4743)
DNA (228bp) protein (76aa)
UPF0109 protein HMPREF1084_00586 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum
hypothetical protein
NECEvent2014_6_5_scaffold_1071_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4792..5037)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1
rpsP; 30S ribosomal protein S16
NECEvent2014_6_5_scaffold_1071_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5080..6438)
DNA (1359bp) protein (453aa)
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clo
ffh; signal recognition particle protein Ffh
NECEvent2014_6_5_scaffold_1071_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6452..6781)
DNA (330bp) protein (110aa)
UPF0122 protein HMPREF1084_00583 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum
hypothetical protein
NECEvent2014_6_5_scaffold_1071_11
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6990..7898)
DNA (909bp) protein (303aa)
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridial
ftsY; signal recognition particle receptor FtsY
Displaying 11 items

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