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gwc1_scaffold_1086

Alias: WS6_GWC1_33_20_7

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc1_scaffold_1086_1
WS6_GWF1_33_233, WS6, Bacteria

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comp(1..228)
-----------------
DNA (228bp)
protein (76aa)
Glycine hydroxymethyltransferase, glycine hydroxymethyltransferase {ECO:0000313|EMBL:KKP45363.1}; EC=2.1.2.1 {ECO:0000313|EMBL:KKP45363.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;"
Glycine/serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Facklamia hominis CCUG 36813 RepID=K1M135_9LACT
SERINE HYDROXYMETHYLTRANSFERASE (db=HMMPanther db_id=PTHR11680 from=3 to=76 evalue=1.2e-32 interpro_id=IPR001085 interpro_description=Serine hydroxymethyltransferase GO=Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372), Biological Process: glycine metabolic process (GO:0006544), Biological Process: L-serine metabolic process (GO:0006563))
gwc1_scaffold_1086_2
WS6_GWF1_33_233, WS6, Bacteria

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comp(215..1069)
-----------------
DNA (855bp)
protein (285aa)
5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PGI7_9PROT
Bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase {EC
THF_DHG_CYH_2 (db=PatternScan db_id=PS00767 from=259 to=267 evalue=0.0 interpro_id=IPR020867 interpro_description=Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid-containing compound biosynthetic process (GO:0009396), Biological Process: oxidation-reduction process (GO:0055114))
gwc1_scaffold_1086_3
WS6_GWC1_33_20, WS6, Bacteria

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comp(1151..1825)
-----------------
DNA (675bp)
protein (225aa)
sortase family protein n=2 Tax=Saccharobacteria RepID=UPI00016B20CB
Sortase {ECO:0000313|EMBL:KKP44011.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
sortase family protein
seg (db=Seg db_id=seg from=20 to=33)
gwc1_scaffold_1086_4
WS6_GWC1_33_20, WS6, Bacteria

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comp(1797..5012)
-----------------
DNA (3216bp)
protein (1072aa)
Putative uncharacterized protein n=1 Tax=Shewanella benthica KT99 RepID=A9EHR7_9GAMM
von Willebrand factor type A {ECO:0000313|EMBL:KKP44012.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
putative repeat protein
seg (db=Seg db_id=seg from=74 to=93)
gwc1_scaffold_1086_5
WS6_GWC1_33_20, WS6, Bacteria

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comp(4963..8676)
-----------------
DNA (3714bp)
protein (1238aa)
Conserved repeat domain n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MC2_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KKP44013.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
putative repeat protein
seg (db=Seg db_id=seg from=39 to=67)
gwc1_scaffold_1086_6
WS6_GWC1_33_20, WS6, Bacteria

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comp(8958..10763)
-----------------
DNA (1806bp)
protein (602aa)
ABC transporter permease n=1 Tax=Paenibacillus terrae (strain HPL-003) RepID=G7W1R0_PAETH
ABC transporter permease, ATP-binding cassette, subfamily B, bacterial {ECO:0000313|EMBL:KKP44014.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacteriu
ABC transporter permease
seg (db=Seg db_id=seg from=393 to=409)
gwc1_scaffold_1086_7
WS6_GWF1_33_233, WS6, Bacteria

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10792..11247
-----------------
DNA (456bp)
protein (152aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TQ03_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKP44239.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
gwc1_scaffold_1086_8
WS6_GWF1_33_233, WS6, Bacteria

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11303..11845
-----------------
DNA (543bp)
protein (181aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44240.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
(db=HMMPfam db_id=PF01381 from=10 to=58 evalue=1.1e-08 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=6 to=71 evalue=4.9e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=75 evalue=4.9e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
gwc1_scaffold_1086_9

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comp(11872..13497)
-----------------
DNA (1626bp)
protein (542aa)
60 kDa chaperonin n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PAX8_DEFDS rbh
60 kDa chaperonin {ECO:0000313|EMBL:KKP55288.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
groEL; chaperonin GroEL
coiled-coil (db=Coil db_id=coil from=389 to=410 evalue=NA)
gwc1_scaffold_1086_10

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comp(13529..13831)
-----------------
DNA (303bp)
protein (101aa)
10 kDa chaperonin n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=CH10_SYMTH
10 kDa chaperonin {ECO:0000313|EMBL:KKP55289.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
groES; molecular chaperone GroES
(db=HMMPfam db_id=PF00166 from=6 to=99 evalue=1.1e-23 interpro_id=IPR020818 interpro_description=Chaperonin Cpn10 GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: protein folding (GO:0006457))
gwc1_scaffold_1086_11

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comp(13907..14503)
-----------------
DNA (597bp)
protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55290.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=4 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
gwc1_scaffold_1086_12
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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comp(14500..16263)
-----------------
DNA (1764bp)
protein (588aa)
Proposed peptidoglycan lipid II flippase MurJ n=1 Tax=Caloramator australicus RC3 RepID=I7LHS1_9CLOT
mviN1; integral membrane protein MviN; K03980 virulence factor Tax=RIFOXYB1_FULL_WS6_33_15_curated
putative peptidoglycan lipid II flippase MurJ
seg (db=Seg db_id=seg from=362 to=375)
gwc1_scaffold_1086_13

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16363..16731
-----------------
DNA (369bp)
protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55292.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwc1_scaffold_1086_14
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(16767..19034)
-----------------
DNA (2268bp)
protein (756aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44246.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=50 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=38)
no description (db=HMMSmart db_id=SM00028 from=653 to=686 evalue=0.00048 interpro_id=IPR019734 interpro_description=Tetratricopeptide repeat GO=Molecular Function: protein binding (GO:0005515))
gwc1_scaffold_1086_15
GWD1_WS6_35_594, WS6, Bacteria

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comp(19113..21026)
-----------------
DNA (1914bp)
protein (638aa)
Chaperone protein DnaK n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=DNAK_SYNAS rbh
Chaperone protein DnaK {ECO:0000313|EMBL:KKP82675.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
Chaperone protein DnaK
seg (db=Seg db_id=seg from=365 to=381)
gwc1_scaffold_1086_16

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comp(21045..21593)
-----------------
DNA (549bp)
protein (183aa)
Protein GrpE n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CXL2_HALOH
Protein GrpE {ECO:0000313|EMBL:KKP55295.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
GrpE protein HSP-70 cofactor
seg (db=Seg db_id=seg from=17 to=30)
gwc1_scaffold_1086_17
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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comp(21612..22340)
-----------------
DNA (729bp)
protein (243aa)
Transcriptional regulator of heat shock gene n=2 Tax=Saccharobacteria RepID=UPI00016B2634
hypothetical protein Tax=RIFOXYB1_FULL_WS6_33_15_curated
Heat-inducible transcription repressor hrcA
(db=HMMPfam db_id=PF01628 from=136 to=223 evalue=1.3e-15 interpro_id=IPR021153 interpro_description=Winged helix-turn-helix transcription repressor, HrcA, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
gwc1_scaffold_1086_18

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22589..24034
-----------------
DNA (1446bp)
protein (482aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55297.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=430 to=448)
gwc1_scaffold_1086_19

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24066..24722
-----------------
DNA (657bp)
protein (219aa)
50S ribosomal protein L25 n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SL37_9CHLR
50S ribosomal protein L25 {ECO:0000313|EMBL:KKP55298.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
50S ribosomal protein L25
seg (db=Seg db_id=seg from=115 to=124)
gwc1_scaffold_1086_20
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

24784..25725
-----------------
DNA (942bp)
protein (314aa)
Putative bi-functional glycosyltransferase/deacetylase n=1 Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=Q82D69_STRAW
Uncharacterized protein {ECO:0000313|EMBL:KKP82670.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
Heptosyltransferase II
(db=HMMPfam db_id=PF00535 from=3 to=172 evalue=1.8e-14 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
gwc1_scaffold_1086_21
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists


comp(25775..26242)
-----------------
DNA (468bp)
protein (156aa)
30S ribosomal protein S7 n=3 Tax=Thermosipho RepID=RS7_THEAB
30S ribosomal protein S7 {ECO:0000313|EMBL:KKP82669.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
rpsG; 30S ribosomal protein S7
RIBOSOMAL_S7 (db=PatternScan db_id=PS00052 from=19 to=45 evalue=0.0 interpro_id=IPR020606 interpro_description=Ribosomal protein S7, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412))
gwc1_scaffold_1086_22
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists


comp(26261..26677)
-----------------
DNA (417bp)
protein (139aa)
30S ribosomal protein S12 n=1 Tax=Filifactor alocis (strain ATCC 35896 / D40 B5) RepID=D6GR10_FILAD
SSU ribosomal protein S12P Tax=RIFOXYB1_FULL_WS6_33_15_curated
SSU ribosomal protein S12P
RIBOSOMAL_S12 (db=PatternScan db_id=PS00055 from=56 to=63 evalue=0.0 interpro_id=IPR006032 interpro_description=Ribosomal protein S12/S23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwc1_scaffold_1086_23

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comp(26703..30590)
-----------------
DNA (3888bp)
protein (1296aa)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K0B7_DEHLB rbh
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKP55302.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
DNA-directed RNA polymerase subunit beta'
seg (db=Seg db_id=seg from=2 to=13)
gwc1_scaffold_1086_24
WS6_GWC1_33_20, WS6, Bacteria

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comp(30590..33940)
-----------------
DNA (3351bp)
protein (1117aa)
DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKP44032.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KKP44032.1};; TaxID=1619089 species="Bacteria; candidate
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZZ4_THERP rbh
no description (db=Gene3D db_id=G3DSA:3.90.1100.10 from=18 to=642 evalue=2.4e-88)
gwc1_scaffold_1086_25

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34204..36411
-----------------
DNA (2208bp)
protein (736aa)
Cell divisionFtsK/SpoIIIE n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MFB9_ALKOO rbh
Cell division FtsK/SpoIIIE {ECO:0000313|EMBL:KKP55304.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
cell division protein FtsK
seg (db=Seg db_id=seg from=5 to=35)
gwc1_scaffold_1086_26
WS6_GWF1_33_233, WS6, Bacteria

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36432..37364
-----------------
DNA (933bp)
protein (311aa)
Uncharacterized protein n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TFS8_CALNY
Uncharacterized protein {ECO:0000313|EMBL:KKP44258.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=102 to=124)
gwc1_scaffold_1086_27
WS6_GWC1_33_20, WS6, Bacteria

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37391..38617
-----------------
DNA (1227bp)
protein (409aa)
Primase, DNA primase protein {ECO:0000313|EMBL:KKP44035.1}; EC=2.7.7.- {ECO:0000313|EMBL:KKP44035.1};; Flags: Fragment;; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate di
DNA primase n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QVH3_ACEAZ
DNA primase
Zinc beta-ribbon (db=superfamily db_id=SSF57783 from=1 to=101 evalue=1.8e-34)
Displaying 27 items

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