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PW_scaffold_47

Alias: PW_Methanogen_55_643_10

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Displaying items 1-30 of 48 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PW_scaffold_47_1
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

690..2009
DNA (1320bp) protein (440aa)
ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; TaxID=2226 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Met
orc1/cdc6 family replication initiation protein
ORC1-type DNA replication protein
PW_scaffold_47_2
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2164..3153
DNA (990bp) protein (330aa)
radA; DNA repair and recombination protein RadA
DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="
DNA repair and recombination protein RadA
PW_scaffold_47_3
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3172..3861
DNA (690bp) protein (230aa)
gph; phosphoglycolate phosphatase (EC:3.1.3.18)
Phosphoglycolate phosphatase {ECO:0000256|HAMAP-Rule:MF_01419, ECO:0000313|EMBL:CAJ36295.1}; Short=PGP {ECO:0000256|HAMAP-Rule:MF_01419};; Short=PGPase {ECO:0000256|HAMAP-Rule:MF_01419};; EC=3.1.3.18
Phosphoglycolate phosphatase
PW_scaffold_47_4
Methanothermobacter sp. CaT2, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3890..4549)
DNA (660bp) protein (220aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleB
triosephosphate isomerase
Triosephosphate isomerase
PW_scaffold_47_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4546..5907)
DNA (1362bp) protein (454aa)
exonuclease RecJ (EC:3.1.-.-)
Single-stranded DNA-specific exonuclease {ECO:0000313|EMBL:KCZ72382.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Me
Exonuclease RecJ
PW_scaffold_47_6
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(5904..6362)
DNA (459bp) protein (153aa)
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343}; TaxID=1434121 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosar
SSU ribosomal protein S13e (S15p)
30S ribosomal protein S15/S13e
PW_scaffold_47_7
unknown

Not on your lists

comp(6495..6674)
DNA (180bp) protein (60aa)
PW_scaffold_47_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6803..7615
DNA (813bp) protein (271aa)
Nitrogenase iron protein {ECO:0000256|HAMAP-Rule:MF_00533}; EC=1.18.6.1 {ECO:0000256|HAMAP-Rule:MF_00533};; Nitrogenase Fe protein {ECO:0000256|HAMAP-Rule:MF_00533}; Nitrogenase component II {ECO:0000
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Nitrogenase iron protein
PW_scaffold_47_9
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(7612..8445)
DNA (834bp) protein (278aa)
endonuclease IV (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2] Tax=RBG_13_Chloroflexi_50_10_curated
endonuclease IV (EC:3.1.21.2)
Endonuclease IV
PW_scaffold_47_10
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8438..9661)
DNA (1224bp) protein (408aa)
GTP-binding proten HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarc
GTPase HflX
PW_scaffold_47_11
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9698..10030)
DNA (333bp) protein (111aa)
Uncharacterized protein {ECO:0000313|EMBL:AKB24352.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina s
hypothetical protein
Uncharacterized protein
PW_scaffold_47_12
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10183..11067
DNA (885bp) protein (295aa)
preprotein translocase subunit SecF
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=523844 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="
Protein-export membrane protein SecF
PW_scaffold_47_13
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11064..12713
DNA (1650bp) protein (550aa)
secD; preprotein translocase subunit SecD
Protein-export membrane protein SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source
Protein-export membrane protein SecD
PW_scaffold_47_14
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12715..13326
DNA (612bp) protein (204aa)
GMP synthase [glutamine-hydrolyzing] subunit A {ECO:0000256|HAMAP-Rule:MF_01510}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_01510};; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_01510}; TaxID=143
GMP synthase (glutamine-hydrolyzing), amidotransferase subunit (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] subunit A
PW_scaffold_47_15
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13420..14388)
DNA (969bp) protein (323aa)
UPF0285 protein MSMTP_0699 {ECO:0000256|HAMAP-Rule:MF_01087}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosa
hypothetical protein
UPF0285 protein Mpsy_2740
PW_scaffold_47_16
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14385..14819)
DNA (435bp) protein (145aa)
UspA domain-containing protein {ECO:0000313|EMBL:EMA37344.1}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma nitratireduce
universal stress protein UspG
UspA domain-containing protein
PW_scaffold_47_17
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

14920..15624
DNA (705bp) protein (235aa)
Subtilisin-like serine protease
Subtilisin-like serine protease {ECO:0000313|EMBL:AIG98655.1}; TaxID=1344584 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fu
Alkaline serine protease (AprM)
PW_scaffold_47_18
Methanofollis liminatans, Methanofollis, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15621..19619
DNA (3999bp) protein (1333aa)
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:EJG08231.1}; TaxID=28892 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanofollis.;" s
hypothetical protein
Peptidase S8 and S53 subtilisin kexin sedolisin
PW_scaffold_47_19
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19619..20425
DNA (807bp) protein (269aa)
Ig domain-containing protein
Ig domain protein group 2 domain protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
PW_scaffold_47_20
Metallosphaera sedula, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

20428..20889
DNA (462bp) protein (154aa)
methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF
Methylated-DNA--protein-cysteine methyltransferase
PW_scaffold_47_21
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20886..21827
DNA (942bp) protein (314aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {E
thiamine-monophosphate kinase
Thiamine-monophosphate kinase
PW_scaffold_47_22
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21824..22633)
DNA (810bp) protein (270aa)
L-aspartate dehydrogenase (EC:1.4.1.21)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales;
Probable L-aspartate dehydrogenase
PW_scaffold_47_23
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22759..23142
DNA (384bp) protein (128aa)
hypothetical protein; K07006 Tax=CG_Desulfob_01
hypothetical protein
Putative uncharacterized protein
PW_scaffold_47_24
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

23148..23834
DNA (687bp) protein (229aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase {ECO:0000313|EMBL:AKB13204.1}; EC=1.1.1.193 {ECO:0000313|EMBL:AKB13204.1};; TaxID=523844 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarc
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193)
5-amino-6-(5-phosphoribosylamino)uracilreductase
PW_scaffold_47_25
unknown

Not on your lists

23831..23992
DNA (162bp) protein (54aa)
PW_scaffold_47_26
unknown

Not on your lists

comp(24058..24633)
DNA (576bp) protein (192aa)
PW_scaffold_47_27
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(24775..25407)
DNA (633bp) protein (211aa)
Putative thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_01686}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01686};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01686};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_0168
Thymidylate synthase (EC:2.1.1.45)
Putative thymidylate synthase
PW_scaffold_47_28
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(25412..26020)
DNA (609bp) protein (203aa)
tRNA (pseudouridine(54)-N(1))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00587}; EC=2.1.1.257 {ECO:0000256|HAMAP-Rule:MF_00587};; TaxID=2226 species="Archaea; Euryarchaeota; Methanomicrobia; Methano
hypothetical protein
tRNA (pseudouridine(54)-N(1))-methyltransferase
PW_scaffold_47_29
unknown

Not on your lists

26126..26266
DNA (141bp) protein (47aa)
PW_scaffold_47_30
Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1), Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

26293..26505
DNA (213bp) protein (71aa)
Uncharacterized protein
Displaying items 1-30 of 48 in total

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