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PW_Methanogen_55_53

PW_Methanosarcinales_56_55
In projects: pw  |  diaphorachaeota  |  archaea_ggkbase  |  Pyrrolysine

Consensus taxonomy: Methanosarcinales  →  Methanomicrobia  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: PW_UNK

Properties

Avg. coverage: 54.61 Longest contig: 236.17 Kbp Bin length: 1.29 Mbp GC content: 55.60 %
Contigs count: 42 Features count: 1386 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 31 / 55 MC: 1 BSCG 19 / 51 ASCG 36 / 38
Displaying 42 items
contig # features sequence size GC content (%) Cov Coding Density (%)
PW_scaffold_0 PW_Methanogen_55_643_1
Order: Methanosarcinales (50%)
268 236171 bp 55.52 54.62 93.23
PW_scaffold_10 PW_Methanogen_55_643_3
Order: Methanosarcinales (50%)
100 85255 bp 55.07 53.79 89.16
PW_scaffold_7 PW_Methanogen_55_643_2
Order: Methanosarcinales (61.18%)
85 93926 bp 55.04 55.22 93.13
PW_scaffold_22 PW_Methanogen_55_643_6
Order: Methanosarcinales (51.35%)
74 66185 bp 54.49 56.33 91.97
PW_scaffold_19 PW_Methanogen_55_643_4
Order: Methanosarcinales (77.14%)
70 67553 bp 56.67 54.23 93.87
PW_scaffold_21 PW_Methanogen_55_643_5
Order: Methanosarcinales (57.58%)
66 66965 bp 55.94 55.28 91.31
PW_scaffold_30 PW_Methanogen_55_643_7
Class: Methanomicrobia (50%)
60 57160 bp 54.83 56.08 93.12
PW_scaffold_34 PW_Methanogen_55_643_8
Phylum: Euryarchaeota (67.35%)
49 51903 bp 51.25 61.24 90.89
PW_scaffold_38 PW_Methanogen_55_643_9
Order: Methanosarcinales (75.51%)
49 47100 bp 59.63 53.38 93.95
PW_scaffold_47 PW_Methanogen_55_643_10
Order: Methanosarcinales (64.58%)
48 42000 bp 56.68 54.83 91.78
PW_scaffold_68 PW_Methanogen_55_643_11
Class: Methanomicrobia (52.38%)
42 34303 bp 55.39 56.39 77.64
PW_scaffold_70 PW_Methanogen_55_643_12
Order: Methanosarcinales (56.76%)
37 33233 bp 57.49 52.05 90.75
PW_scaffold_85 PW_Methanogen_55_643_14
Phylum: Euryarchaeota (66.67%)
36 30767 bp 54.99 57.43 85.08
PW_scaffold_88 PW_Methanogen_55_643_15
Class: Methanomicrobia (55.56%)
36 30606 bp 56.06 56.47 92.43
PW_scaffold_78 PW_Methanogen_55_643_13
Order: Methanosarcinales (50%)
34 32163 bp 56.34 54.58 93.74
PW_scaffold_107 PW_Methanogen_55_643_17
Order: Methanosarcinales (51.61%)
31 27088 bp 54.98 52.74 90.17
PW_scaffold_92 PW_Methanogen_55_643_16
Phylum: Euryarchaeota (73.33%)
30 28725 bp 54.61 49.32 86.98
PW_scaffold_118 PW_Methanogen_55_643_18
Order: Methanosarcinales (60.71%)
28 26072 bp 56.14 55.05 95.97
PW_scaffold_142 PW_Methanogen_55_643_19
Order: Methanosarcinales (61.54%)
26 23038 bp 59.67 51.68 94.14
PW_scaffold_188 PW_Methanogen_55_643_22
Order: Methanosarcinales (59.09%)
22 17835 bp 54.10 42.97 86.07
PW_scaffold_185 PW_Methanogen_55_643_21
Order: Methanosarcinales (52.38%)
21 18042 bp 57.06 55.10 92.35
PW_scaffold_153 PW_Methanogen_55_643_20
Order: Methanosarcinales (65%)
20 20876 bp 57.93 50.39 95.94
PW_scaffold_215 PW_Methanogen_55_643_23
Order: Methanosarcinales (78.95%)
19 16479 bp 57.92 53.40 89.86
PW_scaffold_244 PW_Methanogen_55_643_25
Order: Methanosarcinales (80%)
15 14771 bp 56.20 56.72 93.20
PW_scaffold_216 PW_Methanogen_55_643_24
Order: Methanosarcinales (69.23%)
13 16456 bp 57.92 51.85 94.85
PW_scaffold_259 PW_Methanogen_55_643_26
Order: Methanosarcinales (61.54%)
13 14219 bp 53.53 55.47 86.10
PW_scaffold_302 PW_Methanogen_55_643_27
Order: Methanosarcinales (54.55%)
11 12383 bp 55.62 56.57 84.50
PW_scaffold_406 PW_Methanogen_55_643_30
Species: Pyrococcus yayanosii (60%)
10 9433 bp 52.55 53.33 83.74
PW_scaffold_433 PW_Methanogen_55_643_31
Order: Archaeoglobales (70%)
10 8913 bp 50.36 52.66 78.93
PW_scaffold_331 PW_Methanogen_55_643_28
Order: Methanosarcinales (50%)
10 11273 bp 57.22 50.71 94.50
PW_scaffold_385 PW_Methanogen_55_643_29
Order: Methanosarcinales (77.78%)
9 9955 bp 55.03 55.83 92.61
PW_scaffold_602 PW_Methanogen_55_643_32
Genus: Thermococcus (62.5%)
8 5929 bp 50.65 54.77 91.28
PW_scaffold_638 PW_Methanogen_55_643_34
Phylum: Euryarchaeota (71.43%)
7 5599 bp 58.49 55.75 94.25
PW_scaffold_716 PW_Methanogen_55_643_35
Order: Methanosarcinales (60%)
5 4975 bp 57.69 53.58 93.17
PW_scaffold_1230 PW_Methanogen_55_643_37
Species: Methanocella conradii (50%)
4 2909 bp 57.75 53.01 86.52
PW_scaffold_1236 PW_Methanogen_55_643_38
Species: Pyrococcus horikoshii (50%)
4 2898 bp 51.17 53.62 99.79
PW_scaffold_1327 PW_Methanogen_55_643_41
Species: Thermococcus litoralis (50%)
4 2732 bp 50.84 44.91 95.86
PW_scaffold_1273 PW_Methanogen_55_643_40
Class: Methanomicrobia (66.67%)
3 2839 bp 55.94 51.73 81.05
PW_scaffold_1338 PW_Methanogen_55_643_42
Genus: Thermococcus (66.67%)
3 2712 bp 54.09 51.66 95.13
PW_scaffold_1242 PW_Methanogen_55_643_39
Species: Pyrococcus furiosus (100%)
2 2890 bp 52.98 47.44 96.33
PW_scaffold_1040 PW_Methanogen_55_643_36
Species: Methanothermococcus okinawensis (50%)
2 3412 bp 50.21 53.90 73.24
PW_scaffold_606 PW_Methanogen_55_643_33
Species: Methanolobus psychrophilus (50%)
2 5905 bp 55.21 62.82 81.80
Displaying 42 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.