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PW_scaffold_78

Alias: PW_Methanogen_55_643_13

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Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PW_scaffold_78_1
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1..1173
DNA (1173bp) protein (391aa)
phenylacetate-CoA ligase (EC:6.2.1.30)
Phenylacetate-coenzyme A ligase {ECO:0000313|EMBL:ABE51217.1}; EC=6.2.1.30 {ECO:0000313|EMBL:ABE51217.1};; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarc
Phenylacetate-coenzyme A ligase
PW_scaffold_78_2
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1186..1590
DNA (405bp) protein (135aa)
ACT domain-containing protein
Acetolactate synthase {ECO:0000313|EMBL:KGK98809.1}; TaxID=2226 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides me
ACT domain-containing protein
PW_scaffold_78_3
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1640..2218
DNA (579bp) protein (193aa)
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076};; TaxID=679901 species="Archaea;
Imidazoleglycerol-phosphate dehydratase
PW_scaffold_78_4
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2225..4696
DNA (2472bp) protein (824aa)
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ADE36301.1}; TaxID=547558 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalophilus.;" source="
DEAD/DEAH box helicase domain protein
PW_scaffold_78_5
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4734..5474
DNA (741bp) protein (247aa)
proliferating cell nuclear antigen PcnA
DNA polymerase sliding clamp {ECO:0000256|HAMAP-Rule:MF_00317, ECO:0000256|RuleBase:RU003673}; Proliferating cell nuclear antigen homolog {ECO:0000256|HAMAP-Rule:MF_00317}; TaxID=679901 species="Archa
DNA polymerase sliding clamp
PW_scaffold_78_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

5476..6528
DNA (1053bp) protein (351aa)
DNA primase large subunit; K02685 DNA primase large subunit [EC:2.7.7.-] Tax=RBG_16_Euryarchaeota_41_19_curated
DNA primase large subunit
Probable DNA primase large subunit
PW_scaffold_78_7
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6570..7067
DNA (498bp) protein (166aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET65317.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundi
Uncharacterized protein
PW_scaffold_78_8
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7104..7370
DNA (267bp) protein (89aa)
RNA-binding protein containing KH domain, possibly ribosomal protein
Putative RNA-binding protein containing KH domain, possibly ribosomal protein {ECO:0000313|EMBL:AFD00909.1}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocel
Putative RNA-binding protein containing KH domain, possibly ribosomal protein
PW_scaffold_78_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7556..8836
DNA (1281bp) protein (427aa)
Isopropylmalate/homocitrate/citramalate synthase {ECO:0000313|EMBL:KCZ72822.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candi
pyruvate carboxyltransferase
Pyruvate carboxyltransferase
PW_scaffold_78_10
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9080..9583)
DNA (504bp) protein (168aa)
acetolactate synthase small subunit
Acetolactate synthase, small subunit {ECO:0000313|EMBL:AEH60395.1}; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Metha
Acetolactate synthase, small subunit
PW_scaffold_78_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(9586..11259)
DNA (1674bp) protein (558aa)
acetolactate synthase large subunit (EC:2.2.1.6)
acetolactate synthase, large subunit, biosynthetic type Tax=RBG_16_Euryarchaeota_41_19_curated
Acetolactate synthase
PW_scaffold_78_12
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11310..11771)
DNA (462bp) protein (154aa)
cytidyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00647}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00647};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00647}; Pantetheine-
Phosphopantetheine adenylyltransferase
PW_scaffold_78_13
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11846..12706
DNA (861bp) protein (287aa)
Uncharacterized protein {ECO:0000313|EMBL:AKB84434.1}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoid
hypothetical protein
Putative uncharacterized protein
PW_scaffold_78_14
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

13070..15484
DNA (2415bp) protein (805aa)
actP; copper-transporting P-type ATPase (EC:3.6.3.4) Tax=RBG_16_Chloroflexi_48_8_curated
actP; copper-transporting P-type ATPase (EC:3.6.3.4)
copper-transporting P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] alias=RBG1_1554,RBG1_C00001G01554 id=1251112 tax=RBG1 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota
PW_scaffold_78_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15494..15757
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72803.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;"
hypothetical protein
Uncharacterized protein
PW_scaffold_78_16
unknown

Not on your lists

comp(15770..16891)
DNA (1122bp) protein (374aa)
PW_scaffold_78_17
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16911..17720)
DNA (810bp) protein (270aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridy
pseudouridylate synthase I
tRNA pseudouridine synthase A
PW_scaffold_78_18
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17730..18068)
DNA (339bp) protein (113aa)
hypothetical protein
UPF0212 protein Metho_1695 {ECO:0000256|HAMAP-Rule:MF_01223}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Meth
UPF0212 protein Metho_1695
PW_scaffold_78_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18122..18409)
DNA (288bp) protein (96aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70668.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;"
hypothetical protein
Uncharacterized protein
PW_scaffold_78_20
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18440..20887)
DNA (2448bp) protein (816aa)
glutamate synthase alpha subunit domain-containing protein Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
glutamate synthase alpha subunit domain-containing protein
Glutamate synthase alpha subunit domain protein
PW_scaffold_78_21

Not on your lists

comp(20895..22382)
DNA (1488bp) protein (496aa)
Archaeal glutamate synthase [NADPH] {ECO:0000256|PIRNR:PIRNR006429}; EC=1.4.1.13 {ECO:0000256|PIRNR:PIRNR006429};; TaxID=285360 species="Archaea; environmental samples.;" source="uncultured archaeon G
glutamate synthase (EC:1.4.1.13)
Archaeal glutamate synthase [NADPH]
PW_scaffold_78_22
RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22385..23665)
DNA (1281bp) protein (427aa)
glutamate synthase family protein Tax=RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated
glutamate synthase family protein
Glutamate synthase family protein
PW_scaffold_78_23
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

comp(23658..25406)
DNA (1749bp) protein (583aa)
D-lactate dehydrogenase (EC:1.1.2.4 1.8.98.1)
FAD/FMN-containing dehydrogenases {ECO:0000313|EMBL:BAL58444.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
FAD/FMN-containing dehydrogenases
PW_scaffold_78_24
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(25539..26423)
DNA (885bp) protein (295aa)
agmatinase
Agmatinase {ECO:0000313|EMBL:AGB48457.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethylovorans hol
Agmatinase
PW_scaffold_78_25
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(26424..26807)
DNA (384bp) protein (128aa)
Translation initiation factor 5A {ECO:0000256|HAMAP-Rule:MF_00085, ECO:0000256|SAAS:SAAS00016433}; Hypusine-containing protein {ECO:0000256|HAMAP-Rule:MF_00085}; eIF-5A {ECO:0000256|HAMAP-Rule:MF_0008
translation initiation factor IF-5A
Translation initiation factor 5A
PW_scaffold_78_26
GWB1_OD1_52_6, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(26982..27428)
DNA (447bp) protein (149aa)
Blue (Type 1) copper domain protein {ECO:0000313|EMBL:KKW26278.1}; TaxID=1618674 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Kaiserbacteria) bacterium GW2011_GWB1_52_6.;"
plastocyanin/azurin family copper binding protein
Copper binding protein, plastocyanin/azurin family
PW_scaffold_78_27
Methanolobus psychrophilus R15, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(27548..27850)
DNA (303bp) protein (101aa)
Fe-S cluster domain protein
Fe-S cluster domain protein
PW_scaffold_78_28
CG_Desulfarul_01, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27901..28878)
DNA (978bp) protein (326aa)
bile acid:sodium symporter Tax=CG_Desulfarul_01
bile acid:sodium symporter
Bile acid:sodium symporter
PW_scaffold_78_29
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(28889..29278)
DNA (390bp) protein (130aa)
hypothetical protein Tax=RBG_13_Chloroflexi_50_10_curated
hypothetical protein
hypothetical protein alias=scaffold_7_105,RBG2_C00007G00105 id=1242301 tax=RBG2 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes
PW_scaffold_78_30
RIFOXYB2_FULL_Elusimicrobia_49_7_curated, Elusimicrobia, Bacteria

Not on your lists

comp(29262..29528)
DNA (267bp) protein (89aa)
type 11 methyltransferase Tax=RIFOXYB2_FULL_Elusimicrobia_49_7_curated
redox-active disulfide protein 2
Redox-active disulfide protein 2
Displaying items 1-30 of 34 in total

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