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RBG2_5

Alias: scaffold_5

Search features with annotation key words

Displaying items 1-30 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG2_5_1
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

2..463
DNA (462bp) protein (154aa)
2-oxoglutarate synthase; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] Tax=RBG_13_Chloroflexi_51_36_curated
korB; 2-oxoglutarate synthase subunit KorB (EC:1.2.7.3)
2-oxoglutarate ferredoxin oxidoreductase subunit beta KorB n=1 Tax=Methanobrevibacter ruminantium M1 RepID=D3DZJ9_METRM (db=UNIREF evalue=1.4e-40 bit_score=171.4 identity=54.0 coverage=96.7532467532468)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=1 to=126 evalue=6.7e-37)
RBG2_5_2
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

450..1010
DNA (561bp) protein (187aa)
PorG_2; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma (EC:1.2.7.3); K00177 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] Tax=RBG_13_Chloroflexi_51_36_curated
PorG_2; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma (EC:1.2.7.3)
Pyruvate:ferredoxin oxidoreductase, gamma subunit n=1 Tax=Methanopyrus kandleri AV19 RepID=Q8TXE4_METKA (db=UNIREF evalue=6.3e-32 bit_score=142.9 identity=41.5 coverage=90.3743315508021)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
RBG2_5_3
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(1480..2136)
DNA (657bp) protein (219aa)
putative transposase for insertion sequence element Tax=RBG_13_Chloroflexi_51_36_curated
putative transposase for insertion sequence element
Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24XZ7_DESHY (db=UNIREF evalue=1.8e-30 bit_score=138.3 identity=34.4 coverage=93.1506849315068)
RBG2_5_4
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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2215..2739
DNA (525bp) protein (175aa)
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=RBG_13_Chloroflexi_51_36_curated
Transcriptional repressor NrdR n=5 Tax=Dehalococcoides RepID=NRDR_DEHSC (db=UNIREF evalue=0.0 bit_score=201.1 identity=62.7 coverage=85.1428571428571)
ATP-cone domain-containing protein
seg (db=Seg db_id=seg from=24 to=28)
RBG2_5_5
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

2741..5248
DNA (2508bp) protein (836aa)
nrd-2; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RBG_13_Chloroflexi_51_36_curated
nrd; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
nrd; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=5 Tax=Dehalococcoides RepID=A5FSC1_DEHSB (db=UNIREF evalue=0.0 bit_score=995.0 identity=64.0 coverage=92.2248803827751)
RBG2_5_6
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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5285..6730
DNA (1446bp) protein (482aa)
hpt1; hypoxanthine-guanine phosphoribosyltransferase; K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] Tax=RBG_13_Chloroflexi_51_36_curated
hpt; hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8)
hpt; hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine-guanine phosphoribosyltransferase n=4 Tax=Dehalococcoides RepID=D2BHJ4_DEHSV (db=UNIREF evalue=0.0 bit_score=450.3 identity=46.1 coverage=96.0580912863071)
RBG2_5_7
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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7024..8019
DNA (996bp) protein (332aa)
transmembrane_regions 49..71 Tax=RBG_13_Chloroflexi_51_36_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=81 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=138)
seg (db=Seg db_id=seg from=82 to=95)
RBG2_5_8
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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8020..9048
DNA (1029bp) protein (343aa)
integrase catalytic subunit Tax=RBG_13_Chloroflexi_51_36_curated
integrase catalytic subunit
Integrase catalytic region n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K2K1_DEHLB (db=UNIREF evalue=0.0 bit_score=258.5 identity=42.2 coverage=89.5043731778426)
seg (db=Seg db_id=seg from=279 to=293)
RBG2_5_9
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(9094..10320)
DNA (1227bp) protein (409aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RBG_13_Chloroflexi_51_36_curated
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein n=1 Tax=Desulfotomaculum ruminis DSM 2154 RepID=F6DN66_DESRL (db=UNIREF evalue=0.0 bit_score=295.4 identity=45.4 coverage=79.4621026894866)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D_2_HYDROXYACID_DH_3 (db=PatternScan db_id=PS00671 from=299 to=315 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037), Biological Process: oxidation-reduction process (GO:0055114))
RBG2_5_10
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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10429..10689
DNA (261bp) protein (87aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_36_curated
hypothetical protein
Putative uncharacterized protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W563_DESAS (db=UNIREF evalue=1.5e-12 bit_score=77.4 identity=44.7 coverage=86.2068965517241)
RBG2_5_11
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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10822..11706
DNA (885bp) protein (295aa)
UbiA prenyltransferase; K02548 1,4-dihydroxy-2-naphthoate octaprenyltransferase [EC:2.5.1.74 2.5.1.-] Tax=RBG_13_Chloroflexi_51_36_curated
UbiA prenyltransferase
UbiA prenyltransferase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LFB0_SYNFM (db=UNIREF evalue=0.0 bit_score=297.7 identity=51.0 coverage=97.9661016949153)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
RBG2_5_12
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

11759..11935
DNA (177bp) protein (59aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_36_curated
11759..11935 + ( gc_cont=0.486)
RBG2_5_13
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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11938..12993
DNA (1056bp) protein (352aa)
putative polyprenyl synthetase (EC:2.5.1.-); K13787 geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RBG_13_Chloroflexi_51_36_curated
Putative polyprenyl synthetase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W4Z0_UNCMA (db=UNIREF evalue=0.0 bit_score=267.3 identity=41.5 coverage=93.75)
putative polyprenyl synthetase (EC:2.5.1.-)
seg (db=Seg db_id=seg from=201 to=212)
RBG2_5_14
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(13051..13389)
DNA (339bp) protein (113aa)
transmembrane_regions 52..74 Tax=RBG_13_Chloroflexi_51_36_curated
seg (db=Seg db_id=seg from=58 to=82)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=97)
transmembrane_regions (db=TMHMM db_id=tmhmm from=52 to=74)
RBG2_5_15
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(13536..14528)
DNA (993bp) protein (331aa)
ilvC; ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86] Tax=RBG_13_Chloroflexi_51_36_curated
ketol-acid reductoisomerase
ketol-acid reductoisomerase
Ketol-acid reductoisomerase n=5 Tax=Dehalococcoides RepID=ILVC_DEHSC (db=UNIREF evalue=0.0 bit_score=472.2 identity=68.4 coverage=99.0936555891239)
RBG2_5_16
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(14573..15064)
DNA (492bp) protein (164aa)
ilvH; acetolactate synthase 3 regulatory subunit (EC:2.2.1.6); K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6] Tax=RBG_13_Chloroflexi_51_36_curated
Acetolactate synthase, small subunit n=5 Tax=Dehalococcoides RepID=A5FR45_DEHSB (db=UNIREF evalue=0.0 bit_score=221.9 identity=72.5 coverage=96.9512195121951)
ilvH; acetolactate synthase 3 regulatory subunit (EC:2.2.1.6)
(db=HMMPfam db_id=PF10369 from=87 to=160 evalue=2.5e-31 interpro_id=IPR019455 interpro_description=Acetolactate synthase, small subunit, C-terminal)
RBG2_5_17
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(15200..16897)
DNA (1698bp) protein (566aa)
ilvB; acetolactate synthase, large subunit, biosynthetic type; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RBG_13_Chloroflexi_51_36_curated
ilvB; acetolactate synthase, large subunit, biosynthetic type
ilvB; acetolactate synthase, large subunit, biosynthetic type
Acetolactate synthase n=5 Tax=Dehalococcoides RepID=A5FR34_DEHSB (db=UNIREF evalue=0.0 bit_score=764.2 identity=65.0 coverage=98.7632508833922)
RBG2_5_18
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(16907..18574)
DNA (1668bp) protein (556aa)
ilvD; dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] Tax=RBG_13_Chloroflexi_51_36_curated
ilvD; dihydroxyacid dehydratase (EC:4.2.1.9)
ilvD; dihydroxyacid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=5 Tax=Dehalococcoides RepID=ILVD_DEHSC (db=UNIREF evalue=0.0 bit_score=759.2 identity=66.3 coverage=99.6402877697842)
RBG2_5_19
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(18934..19398)
DNA (465bp) protein (155aa)
collagen Tax=RBG_13_Chloroflexi_51_36_curated
collagen
seg (db=Seg db_id=seg from=5 to=25)
seg (db=Seg db_id=seg from=26 to=61)
RBG2_5_20
CG_Dehalo_02, Dehalococcoidia, Chloroflexi, Bacteria

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19668..19895
DNA (228bp) protein (76aa)
hydrogenase assembly chaperone HypC/HupF; K04653 hydrogenase expression/formation protein HypC Tax=CG_Dehalo_02
Hydrogenase assembly chaperone hypC/hupF n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K271_DEHLB (db=UNIREF evalue=4.4e-16 bit_score=89.0 identity=57.5 coverage=94.7368421052632)
hydrogenase assembly chaperone HypC/HupF
HUPF_HYPC (db=PatternScan db_id=PS01097 from=1 to=9 evalue=0.0 interpro_id=IPR019812 interpro_description=Hydrogenase assembly chaperone, conserved site)
RBG2_5_21
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

19882..20976
DNA (1095bp) protein (365aa)
hypD; hydrogenase maturation factor; K04654 hydrogenase expression/formation protein HypD Tax=RBG_13_Chloroflexi_51_36_curated
hypD; hydrogenase maturation factor
hypD; hydrogenase maturation factor
Hydrogenase expression/formation protein HypD n=5 Tax=Dehalococcoides RepID=A5FPQ9_DEHSB (db=UNIREF evalue=0.0 bit_score=477.2 identity=61.4 coverage=98.0821917808219)
RBG2_5_22
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

21007..22011
DNA (1005bp) protein (335aa)
hypE; hydrogenase maturation factor; K04655 hydrogenase expression/formation protein HypE Tax=RBG_13_Chloroflexi_51_36_curated
hypE; hydrogenase maturation factor
hypE; hydrogenase maturation factor
Hydrogenase expression/formation protein HypE n=2 Tax=Dehalococcoides RepID=Q3Z6K6_DEHE1 (db=UNIREF evalue=0.0 bit_score=427.9 identity=63.6 coverage=99.4029850746269)
RBG2_5_23
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

22057..22878
DNA (822bp) protein (274aa)
ATP-NAD/AcoX kinase; K00858 NAD+ kinase [EC:2.7.1.23] Tax=RBG_13_Chloroflexi_51_36_curated
ATP-NAD/AcoX kinase
Probable inorganic polyphosphate/ATP-NAD kinase n=5 Tax=Dehalococcoides RepID=PPNK_DEHSC (db=UNIREF evalue=0.0 bit_score=234.2 identity=43.7 coverage=98.9051094890511)
NAD kinase (db=superfamily db_id=SSF111331 from=2 to=266 evalue=1.1e-65 interpro_id=IPR016064 interpro_description=ATP-NAD kinase, PpnK-type GO=Molecular Function: NAD+ kinase activity (GO:0003951), Biological Process: metabolic process (GO:0008152))
RBG2_5_24
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

22868..23332
DNA (465bp) protein (155aa)
N-acetyltransferase GCN5; K00619 amino-acid N-acetyltransferase [EC:2.3.1.1] Tax=RBG_13_Chloroflexi_51_36_curated
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K416_DEHLB (db=UNIREF evalue=1.4e-45 bit_score=187.6 identity=55.5 coverage=93.5483870967742)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=4 to=140 evalue=2.2e-24 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
RBG2_5_25
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

23378..23917
DNA (540bp) protein (180aa)
MutT/nudix, ADP-ribose pyrophosphatase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13] Tax=RBG_13_Chloroflexi_51_36_curated
DNA mismatch repair protein MutT
MutT/nudix family protein n=2 Tax=Dehalococcoides RepID=Q3Z999_DEHE1 (db=UNIREF evalue=2.8e-37 bit_score=160.6 identity=46.4 coverage=92.7777777777778)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=76 to=97 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
RBG2_5_26
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

24064..25140
DNA (1077bp) protein (359aa)
filamentous hemagglutinin outer membrane protein Tax=RBG_13_Chloroflexi_51_36_curated
filamentous hemagglutinin outer membrane protein
GLUG domain protein n=1 Tax=Methanosalsum zhilinae DSM 4017 RepID=F7XND0_METZD (db=UNIREF evalue=0.0 bit_score=219.9 identity=37.2 coverage=93.3147632311978)
seg (db=Seg db_id=seg from=164 to=183)
RBG2_5_27
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

25315..25635
DNA (321bp) protein (107aa)
seg 78..102 Tax=RBG_13_Chloroflexi_51_36_curated
seg (db=Seg db_id=seg from=78 to=102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=24 evalue=6.0)
RBG2_5_28
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(25797..28130)
DNA (2334bp) protein (778aa)
hypF; [NiFe] hydrogenase maturation protein HypF; K04656 hydrogenase maturation protein HypF Tax=RBG_13_Chloroflexi_51_36_curated
HAD family hydrolase
HAD family hydrolase
[NiFe] hydrogenase maturation protein HypF n=2 Tax=Dehalococcoides RepID=Q3Z6K9_DEHE1 (db=UNIREF evalue=0.0 bit_score=871.7 identity=55.6 coverage=96.9151670951157)
RBG2_5_29
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(28215..30041)
DNA (1827bp) protein (609aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=RBG_13_Chloroflexi_51_36_curated
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9RZI0_THEOJ (db=UNIREF evalue=0.0 bit_score=251.1 identity=35.6 coverage=86.863711001642)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
seg (db=Seg db_id=seg from=541 to=552)
RBG2_5_30
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

30545..32788
DNA (2244bp) protein (748aa)
serine/threonine protein kinase (EC:2.7.11.1); K00870 protein kinase [EC:2.7.1.37] Tax=RBG_13_Chloroflexi_51_36_curated
Serine/threonine protein kinase n=1 Tax=Picrophilus torridus DSM 9790 RepID=Q6L2T2_PICTO (db=UNIREF evalue=0.0 bit_score=521.9 identity=38.6 coverage=97.7272727272727)
serine/threonine protein kinase (EC:2.7.11.1)
serine/threonine protein kinase (EC:2.7.11.1)
Displaying items 1-30 of 178 in total

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