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RBG2_11

Alias: scaffold_11

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG2_11_1
unknown

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comp(1..456)
DNA (456bp)
23S ribosomal RNA
RBG2_11_2
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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2..208
DNA (207bp) protein (69aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL49890.1}; TaxID=748671 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus crispatus (strain
Putative uncharacterized protein n=1 Tax=Lactobacillus crispatus ST1 RepID=D5H1K5_LACCS (db=UNIREF evalue=8.0e-25 bit_score=117.9 identity=86.2 coverage=92.7536231884058)
RBG2_11_3
RBG2, RBG2, RBG2, RBG2, Chloroflexi, Bacteria

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512..805
DNA (294bp) protein (98aa)
no description (db=Gene3D db_id=G3DSA:3.30.70.900 from=2 to=95 evalue=1.8e-13)
Dimeric alpha+beta barrel (db=superfamily db_id=SSF54909 from=1 to=94 evalue=3.0e-21 interpro_id=IPR011008 interpro_description=Dimeric alpha-beta barrel)
no description (db=HMMSmart db_id=SM00886 from=2 to=97 evalue=4.9e-17 interpro_id=IPR013097 interpro_description=Stress responsive alpha-beta barrel)
(db=HMMPfam db_id=PF07876 from=2 to=94 evalue=6.5e-18 interpro_id=IPR013097 interpro_description=Stress responsive alpha-beta barrel)
RBG2_11_4
RBG_19FT_COMBO_Chloroflexi_47_15_curated, Chloroflexi, Bacteria

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comp(980..1213)
DNA (234bp) protein (78aa)
source missing description 7..101 Tax=RBG_19FT_COMBO_Chloroflexi_47_15_curated
980..1213 - ( gc_cont=0.453)
RBG2_11_5
RBG2, RBG2, RBG2, RBG2, Chloroflexi, Bacteria

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comp(1210..1731)
DNA (522bp) protein (174aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=150 to=172)
transmembrane_regions (db=TMHMM db_id=tmhmm from=115 to=137)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
RBG2_11_6
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(1831..3258)
DNA (1428bp) protein (476aa)
seg 321..329 Tax=RBG_13_Chloroflexi_51_36_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
no description (db=Gene3D db_id=G3DSA:3.40.50.9600 from=36 to=200 evalue=0.00025)
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=35 to=445 evalue=2.8e-11)
RBG2_11_7
RBG_19FT_COMBO_Chloroflexi_47_15_curated, Chloroflexi, Bacteria

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comp(3659..3973)
DNA (315bp) protein (105aa)
source missing description 7..101 Tax=RBG_19FT_COMBO_Chloroflexi_47_15_curated
(db=HMMPfam db_id=PF07110 from=7 to=101 evalue=4.0e-06 interpro_id=IPR009799 interpro_description=Ethyl tert-butyl ether degradation EthD)
(db=HMMPfam db_id=PF11639 from=9 to=86 evalue=7.6e-09 interpro_id=IPR021667 interpro_description=REDY-like protein HapK)
Dimeric alpha+beta barrel (db=superfamily db_id=SSF54909 from=1 to=103 evalue=7.2e-09 interpro_id=IPR011008 interpro_description=Dimeric alpha-beta barrel)
RBG2_11_8
RBG_19FT_COMBO_Chloroflexi_49_13_curated, Chloroflexi, Bacteria

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comp(4073..5158)
DNA (1086bp) protein (362aa)
cellulase (EC:3.2.1.4) Tax=RBG_19FT_COMBO_Chloroflexi_49_13_curated
Cellulase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E132_DICTD (db=UNIREF evalue=0.0 bit_score=411.0 identity=58.0 coverage=95.5801104972376)
cellulase (EC:3.2.1.4)
RBG2_11_9

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5443..5919
DNA (477bp) protein (159aa)
Marine sediment metagenome DNA, contig: S03H2_C02821 {ECO:0000313|EMBL:GAH18715.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
coiled-coil (db=Coil db_id=coil from=119 to=140 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
RBG2_11_10
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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6137..7675
DNA (1539bp) protein (513aa)
Fe-S oxidoreductase Tax=RBG_13_Chloroflexi_51_36_curated
Radical SAM domain protein n=1 Tax=Thermotogales bacterium MesG1.Ag.4.2 RepID=E0I1B9_9BACT (db=UNIREF evalue=0.0 bit_score=636.0 identity=62.0 coverage=94.7368421052632)
Fe-S oxidoreductase
Fe-S oxidoreductase
RBG2_11_11
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(7695..8210)
DNA (516bp) protein (172aa)
dUTP pyrophosphatase; K01520 dUTP pyrophosphatase [EC:3.6.1.23] Tax=RBG_13_Chloroflexi_51_36_curated
dUTP pyrophosphatase
Probable deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Methanohalobium evestigatum Z-7303 RepID=D7EB35_METEZ (db=UNIREF evalue=4.3e-43 bit_score=179.9 identity=51.2 coverage=97.0930232558139)
dUTPase-like (db=superfamily db_id=SSF51283 from=3 to=169 evalue=5.1e-29)
RBG2_11_12
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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8458..9000
DNA (543bp) protein (181aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_36_curated
hypothetical protein
Putative uncharacterized protein n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1P3_DEHLB (db=UNIREF evalue=0.0 bit_score=216.9 identity=57.9 coverage=97.7900552486188)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=179 evalue=0.00032)
RBG2_11_13
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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8997..9479
DNA (483bp) protein (161aa)
deoxycytidylate deaminase Tax=RBG_13_Chloroflexi_51_36_curated
CMP/dCMP deaminase zinc-binding protein
CMP/dCMP deaminase, zinc-binding protein n=5 Tax=Dehalococcoides RepID=A5FS48_DEHSB (db=UNIREF evalue=0.0 bit_score=242.7 identity=71.6 coverage=95.6521739130435)
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=81 to=116 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
RBG2_11_14
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(9552..9941)
DNA (390bp) protein (130aa)
N-acetyltransferase GCN5 Tax=RBG_13_Chloroflexi_51_36_curated
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K120_DEHLB (db=UNIREF evalue=1.6e-29 bit_score=134.4 identity=50.8 coverage=97.6923076923077)
coiled-coil (db=Coil db_id=coil from=68 to=89 evalue=NA)
RBG2_11_15
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(9943..11031)
DNA (1089bp) protein (363aa)
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RBG_13_Chloroflexi_51_36_curated
D-alanine--D-alanine ligase n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K119_DEHLB (db=UNIREF evalue=0.0 bit_score=280.0 identity=47.3 coverage=90.0826446280992)
D-alanine--D-alanine ligase (EC:6.3.2.4)
(db=HMMPfam db_id=PF07478 from=120 to=326 evalue=1.5e-28 interpro_id=IPR011095 interpro_description=D-alanine--D-alanine ligase, C-terminal GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716))
RBG2_11_16
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(11016..12020)
DNA (1005bp) protein (335aa)
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RBG_13_Chloroflexi_51_36_curated
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-ala D-ala ligase n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z8S8_DEHE1 (db=UNIREF evalue=0.0 bit_score=377.5 identity=56.2 coverage=97.6119402985075)
RBG2_11_17
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(12033..13427)
DNA (1395bp) protein (465aa)
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2); K01843 lysine 2,3-aminomutase [EC:5.4.3.2] Tax=RBG_13_Chloroflexi_51_36_curated
Lysine 2,3-aminomutase YodO family protein n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K117_DEHLB (db=UNIREF evalue=0.0 bit_score=537.0 identity=60.9 coverage=87.5268817204301)
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2)
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2)
RBG2_11_18
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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13748..14068
DNA (321bp) protein (107aa)
transcriptional regulator, ArsR family Tax=RBG_13_Chloroflexi_51_36_curated
hypothetical protein
Transcriptional regulator, TrmB n=5 Tax=Dehalococcoides RepID=A5FQZ4_DEHSB (db=UNIREF evalue=1.2e-24 bit_score=117.9 identity=57.9 coverage=87.8504672897196)
(db=HMMPfam db_id=PF01047 from=10 to=55 evalue=1.2e-06 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
RBG2_11_19
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(14309..15691)
DNA (1383bp) protein (461aa)
transport protein Tax=RBG_13_Chloroflexi_51_36_curated
transport protein
transport protein
Putative transport protein n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A2D6_THESM (db=UNIREF evalue=0.0 bit_score=595.9 identity=64.7 coverage=97.3969631236443)
RBG2_11_20
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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15839..16747
DNA (909bp) protein (303aa)
cation efflux protein Tax=RBG_13_Chloroflexi_51_36_curated
cation efflux protein
Cation diffusion facilitator family transporter n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K3A3_DEHLB (db=UNIREF evalue=0.0 bit_score=261.9 identity=44.3 coverage=98.019801980198)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
RBG2_11_21
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(17105..17452)
DNA (348bp) protein (116aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_36_curated
17105..17452 - ( gc_cont=0.497)
RBG2_11_22
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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17528..17710
DNA (183bp) protein (61aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_36_curated
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanocella paludicola SANAE RepID=D1YV78_METPS (db=UNIREF evalue=7.8e-16 bit_score=87.8 identity=66.7 coverage=91.8032786885246)
(db=HMMPfam db_id=PF03966 from=2 to=48 evalue=2.5e-09 interpro_id=IPR005651 interpro_description=Uncharacterised protein family UPF0434/Trm112)
RBG2_11_23
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(17712..18080)
DNA (369bp) protein (123aa)
bifunctional 6-pyruvoyl tetrahydropterin synthase/hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RBG_13_Chloroflexi_51_36_curated
bifunctional 6-pyruvoyl tetrahydropterin synthase/hypothetical protein
Putative uncharacterized protein n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K2B5_DEHLB (db=UNIREF evalue=6.4e-33 bit_score=145.6 identity=56.6 coverage=96.7479674796748)
Tetrahydrobiopterin biosynthesis enzymes-like (db=superfamily db_id=SSF55620 from=1 to=122 evalue=1.0e-38)
RBG2_11_24
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(18049..18567)
DNA (519bp) protein (173aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3) Tax=RBG_13_Chloroflexi_51_36_curated
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CEZ1_THET1 (db=UNIREF evalue=1.5e-40 bit_score=171.4 identity=52.2 coverage=91.9075144508671)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
seg (db=Seg db_id=seg from=63 to=72)
RBG2_11_25
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(18573..19451)
DNA (879bp) protein (293aa)
folP; dihydropteroate synthase (EC:2.5.1.15) Tax=RBG_13_Chloroflexi_51_36_curated
folP; dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase n=3 Tax=Dehalococcoides PF3_DEHSB">RepID=A5FPF3_DEHSB (db=UNIREF evalue=0.0 bit_score=309.3 identity=55.8 coverage=93.8566552901024)
DHPS_2 (db=PatternScan db_id=PS00793 from=60 to=73 evalue=0.0 interpro_id=IPR000489 interpro_description=Pterin-binding GO=Biological Process: pteridine-containing compound metabolic process (GO:0042558))
RBG2_11_26
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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19544..20797
DNA (1254bp) protein (418aa)
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RBG_13_Chloroflexi_51_36_curated
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit 1 n=5 Tax=Dehalococcoides RepID=A5FS15_DEHSB (db=UNIREF evalue=0.0 bit_score=575.1 identity=67.1 coverage=99.5215311004785)
RBG2_11_27
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

20797..21330
DNA (534bp) protein (178aa)
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] Tax=RBG_13_Chloroflexi_51_36_curated
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase, small subunit n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K407_DEHLB (db=UNIREF evalue=0.0 bit_score=209.9 identity=63.9 coverage=90.4494382022472)
seg (db=Seg db_id=seg from=58 to=65)
RBG2_11_28
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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21362..22456
DNA (1095bp) protein (365aa)
Isocitrate dehydrogenase (EC:1.1.1.41); K00030 isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] Tax=RBG_13_Chloroflexi_51_36_curated
Isocitrate dehydrogenase (NAD(+)) n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K408_DEHLB (db=UNIREF evalue=0.0 bit_score=477.2 identity=64.8 coverage=96.986301369863)
Isocitrate dehydrogenase (EC:1.1.1.41)
Isocitrate dehydrogenase (EC:1.1.1.41)
RBG2_11_29
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

22762..23040
DNA (279bp) protein (93aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_36_curated
hypothetical protein
Putative uncharacterized protein n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6L3_UNCMA (db=UNIREF evalue=1.4e-08 bit_score=64.3 identity=42.0 coverage=88.1720430107527)
RBG2_11_30
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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23119..24474
DNA (1356bp) protein (452aa)
lysA; diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RBG_13_Chloroflexi_51_36_curated
lysA; diaminopimelate decarboxylase
lysA; diaminopimelate decarboxylase
Diaminopimelate decarboxylase n=5 Tax=Dehalococcoides RepID=A5FRS3_DEHSB (db=UNIREF evalue=0.0 bit_score=496.1 identity=57.9 coverage=95.353982300885)
Displaying items 1-30 of 64 in total

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