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RBG2_21

Alias: scaffold_23

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG2_21_1
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

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comp(1..1215)
DNA (1215bp) protein (405aa)
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RBG_13_Chloroflexi_52_14_curated
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1T4_DEHLB (db=UNIREF evalue=0.0 bit_score=615.5 identity=68.8 coverage=99.2592592592593)
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=12 to=23 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
RBG2_21_2
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

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comp(1287..2084)
DNA (798bp) protein (266aa)
ABC transporter; K01992 ABC-2 type transport system permease protein Tax=RBG_13_Chloroflexi_52_14_curated
ABC transporter
ABC-2 type transporter n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IAL7_ACIB4 (db=UNIREF evalue=1.5e-26 bit_score=125.6 identity=30.4 coverage=92.4812030075188)
transmembrane_regions (db=TMHMM db_id=tmhmm from=238 to=260)
RBG2_21_3
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

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comp(2085..3029)
DNA (945bp) protein (315aa)
ABC-type multidrug transport system, ATPase component Tax=RBG_13_Chloroflexi_52_14_curated
ABC transporter, ATP-binding protein
ABC transporter related protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IAL6_ACIB4 (db=UNIREF evalue=0.0 bit_score=230.3 identity=38.9 coverage=93.6507936507936)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=259 evalue=2.0e-83)
RBG2_21_4
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

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comp(3168..3677)
DNA (510bp) protein (170aa)
MarR family transcriptional regulator Tax=RBG_13_Chloroflexi_54_8_curated
MarR family transcriptional regulator
Transcriptional regulator, MarR family n=1 Tax=Streptomyces sp. SirexAA-E RepID=G2NKB5_9ACTO (db=UNIREF evalue=1.8e-09 bit_score=68.2 identity=31.0 coverage=82.9411764705882)
(db=HMMPfam db_id=PF01047 from=67 to=114 evalue=1.0e-06 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
RBG2_21_5
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

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comp(3720..4565)
DNA (846bp) protein (282aa)
tetrapyrrole methylase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=RBG_13_Chloroflexi_52_14_curated
Ribosomal RNA small subunit methyltransferase I n=2 Tax=Dehalococcoides RepID=Q3Z9G8_DEHE1 (db=UNIREF evalue=0.0 bit_score=328.2 identity=61.0 coverage=96.0992907801418)
tetrapyrrole methylase
tetrapyrrole methylase
Displaying 5 items

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