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RBG2_28

Alias: scaffold_30

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG2_28_1
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(883..1026)
DNA (144bp) protein (48aa)
seg 8..20 Tax=RBG_13_Bathyarchaeota_38_9_curated
putative membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=36)
seg (db=Seg db_id=seg from=28 to=36)
RBG2_28_2
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

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comp(1073..1717)
DNA (645bp) protein (215aa)
seg 33..60 Tax=RBG_13_Chloroflexi_50_10_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=188 to=210)
transmembrane_regions (db=TMHMM db_id=tmhmm from=151 to=173)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=138)
RBG2_28_3

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comp(1816..2406)
DNA (591bp) protein (197aa)
Marine sediment metagenome DNA, contig: S03H2_C02605 {ECO:0000313|EMBL:GAH30001.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase, flavin-dependent n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K155_DEHLB (db=UNIREF evalue=0.0 bit_score=258.8 identity=65.1 coverage=98.4771573604061)
thyX: thymidylate synthase, flavin-dependent (db=HMMTigr db_id=TIGR02170 from=8 to=196 evalue=1.6e-51 interpro_id=IPR003669 interpro_description=Thymidylate synthase ThyX GO=Biological Process: dTMP biosynthetic process (GO:0006231), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Molecular Function: thymidylate synthase (FAD) activity (GO:0050797))
RBG2_28_4
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(2567..2686)
DNA (120bp) protein (40aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_36_curated
2567..2686 - ( gc_cont=0.508)
RBG2_28_5
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(2683..2925)
DNA (243bp) protein (81aa)
FmdB family regulatory protein Tax=RBG_13_Chloroflexi_51_36_curated
putative regulatory protein, FmdB family
Putative regulatory protein, FmdB family n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYZ0_THERP (db=UNIREF evalue=2.8e-13 bit_score=79.7 identity=44.3 coverage=96.2962962962963)
no description (db=HMMSmart db_id=SM00834 from=1 to=41 evalue=1.0e-10 interpro_id=IPR013429 interpro_description=Regulatory protein, FmdB, putative)
RBG2_28_6
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(2938..3192)
DNA (255bp) protein (85aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_36_curated
2938..3192 - ( gc_cont=0.494)
Displaying 6 items

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