ggKbase home page

RBG2_34

Alias: scaffold_36

Search features with annotation key words

Displaying 4 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG2_34_1

Not on your lists

comp(2..91)
DNA (90bp) protein (30aa)
Marine sediment metagenome DNA, contig: S12H4_S01898 {ECO:0000313|EMBL:GAJ02572.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
2..91 - ( gc_cont=0.544)
RBG2_34_2
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(144..971)
DNA (828bp) protein (276aa)
LuxR family transcriptional regulator Tax=RBG_13_Chloroflexi_51_36_curated
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family n=1 Tax=Thermaerobacter marianensis DSM 12885 RepID=E6SMC6_THEM7 (db=UNIREF evalue=1.4e-27 bit_score=129.0 identity=49.2 coverage=45.2898550724638)
no description (db=HMMSmart db_id=SM00448 from=5 to=123 evalue=0.0057 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
RBG2_34_3
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(1190..1669)
DNA (480bp) protein (160aa)
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Tax=RBG_13_Chloroflexi_51_36_curated
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Two component transcriptional regulator, LuxR family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TNR2_9CHLR (db=UNIREF evalue=1.0e-35 bit_score=155.2 identity=47.1 coverage=97.5)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=111 to=138 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
RBG2_34_4
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(1801..2658)
DNA (858bp) protein (286aa)
hypothetical protein Tax=RBG_13_Chloroflexi_51_36_curated
PAS domain-containing protein
Multi-sensor signal transduction histidine kinase n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8G147_DESHD (db=UNIREF evalue=2.1e-42 bit_score=178.3 identity=37.0 coverage=97.5524475524475)
coiled-coil (db=Coil db_id=coil from=39 to=75 evalue=NA)
Displaying 4 items

View Taxonomy