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RBG1351_17

Alias: RBG_1351c3_17

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Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG1351_17_1
RBG_13_Chloroflexi_52_12_curated, Chloroflexi, Bacteria

Not on your lists

1..192
DNA (192bp) protein (64aa)
transaldolase-like protein; K00616 transaldolase [EC:2.2.1.2] Tax=RBG_13_Chloroflexi_52_12_curated
transaldolase
Probable transaldolase n=1 Tax=Desulfotomaculum kuznetsovii DSM 6115 RepID=F6CRF0_DESK7 (db=UNIREF evalue=1.4e-16 bit_score=90.5 identity=67.2 coverage=93.75)
(db=HMMPfam db_id=PF00923 from=5 to=47 evalue=1.5e-07 interpro_id=IPR001585 interpro_description=Transaldolase GO=Biological Process: carbohydrate metabolic process (GO:0005975))
RBG1351_17_2
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

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246..1529
DNA (1284bp) protein (428aa)
rho; transcription termination factor Rho; K03628 transcription termination factor Rho Tax=RBG_16_Chloroflexi_50_11_curated
Transcription termination factor Rho n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K298_DEHLB (db=UNIREF evalue=1.7e-179 bit_score=634.4 identity=76.1 coverage=97.42990654205607)
transcription termination factor Rho
transcription termination factor Rho
RBG1351_17_3
RBG_13_Chloroflexi_52_12_curated, Chloroflexi, Bacteria

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1532..1858
DNA (327bp) protein (109aa)
Marine sediment metagenome DNA, contig: S12H4_L02850 Tax=RBG_13_Chloroflexi_52_12_curated
1532..1858 + ( gc_cont=0.489)
RBG1351_17_4
RBG_19FT_COMBO_Chloroflexi_47_15_curated, Chloroflexi, Bacteria

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comp(1905..2828)
DNA (924bp) protein (308aa)
LysR family transcriptional regulator Tax=RBG_19FT_COMBO_Chloroflexi_47_15_curated
LysR family transcriptional regulator
Transcriptional regulator, LysR family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AG49_CARHZ (db=UNIREF evalue=1.7e-24 bit_score=119.0 identity=28.9 coverage=91.55844155844156)
coiled-coil (db=Coil db_id=coil from=244 to=265 evalue=NA)
RBG1351_17_5
RBG_16_Chloroflexi_56_11_curated, Chloroflexi, Bacteria

Not on your lists

3092..3958
DNA (867bp) protein (289aa)
padX1; molybdopterin oxidoreductase membrane anchor PadX Tax=RBG_16_Chloroflexi_56_11_curated
padX2; membrane anchor for molybdopterin oxidoreductase PadBC2
Probable membrane anchor for molybdopterin oxidoreductase PadBC2, n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P035_AROAE (db=UNIREF evalue=1.2e-30 bit_score=139.4 identity=30.0 coverage=95.8477508650519)
RBG1351_17_6
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

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comp(4005..4910)
DNA (906bp) protein (302aa)
tyrA; chorismate mutase/prephenate dehydratase (EC:5.4.99.5); K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] Tax=RBG_16_Chloroflexi_50_11_curated
chorismate mutase
chorismate mutase
Chorismate mutase n=5 Tax=Dehalococcoides mccartyi RepID=A5FS05_DEHSB (db=UNIREF evalue=2.3e-98 bit_score=364.4 identity=58.1 coverage=99.33774834437085)
RBG1351_17_7
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

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comp(5083..6174)
DNA (1092bp) protein (364aa)
aroC; chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] Tax=RBG_13_Chloroflexi_51_18_curated
aroC; chorismate synthase (EC:4.2.3.5)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=5 Tax=Dehalococcoides mccartyi RepID=AROC_DEHSC (db=UNIREF evalue=7.9e-125 bit_score=452.6 identity=60.6 coverage=99.45054945054946)
RBG1351_17_8
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

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comp(6167..6592)
DNA (426bp) protein (142aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RBG_16_Chloroflexi_50_11_curated
3-phosphoshikimate 1-carboxyvinyltransferase
3-phosphoshikimate 1-carboxyvinyltransferase n=4 Tax=Dehalococcoides mccartyi RepID=AROA_DEHSB (db=UNIREF evalue=2.8e-17 bit_score=94.0 identity=40.0 coverage=78.16901408450704)
EPSP_SYNTHASE_2 (db=PatternScan db_id=PS00885 from=21 to=39 evalue=0.0 interpro_id=IPR023193 interpro_description=3-phosphoshikimate 1-carboxyvinyltransferase, conserved site)
RBG1351_17_9
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

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comp(6666..7544)
DNA (879bp) protein (293aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RBG_13_Chloroflexi_51_18_curated
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K3M8_DEHLB (db=UNIREF evalue=7.4e-49 bit_score=199.9 identity=41.0 coverage=95.22184300341297)
seg (db=Seg db_id=seg from=15 to=31)
RBG1351_17_10
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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comp(7525..8067)
DNA (543bp) protein (181aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] Tax=RBG_13_Chloroflexi_51_52_curated
Shikimate kinase n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K3M9_DEHLB (db=UNIREF evalue=1.7e-32 bit_score=144.8 identity=44.8 coverage=96.68508287292818)
aroK; shikimate kinase (EC:2.7.1.71)
SHIKIMATE_KINASE (db=PatternScan db_id=PS01128 from=62 to=87 evalue=0.0 interpro_id=IPR023000 interpro_description=Shikimate kinase, conserved site)
RBG1351_17_11
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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comp(8057..8929)
DNA (873bp) protein (291aa)
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RBG_13_Chloroflexi_51_52_curated
shikimate 5-dehydrogenase
Shikimate dehydrogenase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=AROE_DESRM (db=UNIREF evalue=5.1e-66 bit_score=256.9 identity=48.4 coverage=96.56357388316151)
seg (db=Seg db_id=seg from=126 to=138)
RBG1351_17_12
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(8919..9587)
DNA (669bp) protein (223aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03785 3-dehydroquinate dehydratase I [EC:4.2.1.10] Tax=RBG_13_Chloroflexi_51_52_curated
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K3N1_DEHLB (db=UNIREF evalue=3.2e-52 bit_score=210.7 identity=50.2 coverage=95.51569506726457)
3-DEHYDROQUINATE DEHYDRATASE (db=HMMPanther db_id=PTHR21088 from=21 to=221 evalue=1.8e-07)
RBG1351_17_13
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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comp(9568..10662)
DNA (1095bp) protein (365aa)
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=RBG_13_Chloroflexi_51_52_curated
3-dehydroquinate synthase
3-dehydroquinate synthase
3-dehydroquinate synthase n=1 Tax=Thermincola potens JR RepID=D5X7L9_THEPJ (db=UNIREF evalue=1.3e-87 bit_score=328.9 identity=49.0 coverage=94.52054794520548)
RBG1351_17_14
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists


10907..11398
DNA (492bp) protein (164aa)
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RBG_13_Chloroflexi_51_52_curated
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 n=5 Tax=Dehalococcoides mccartyi RepID=RS12_DEHE1 (db=UNIREF evalue=7.5e-59 bit_score=232.3 identity=78.3 coverage=86.58536585365853)
RIBOSOMAL_S12 (db=PatternScan db_id=PS00055 from=74 to=81 evalue=0.0 interpro_id=IPR006032 interpro_description=Ribosomal protein S12/S23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RBG1351_17_15
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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11414..11884
DNA (471bp) protein (157aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=RBG_13_Chloroflexi_51_52_curated
30S ribosomal protein S7
30S ribosomal protein S7 n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2K1_SPHTD (db=UNIREF evalue=6.8e-49 bit_score=199.1 identity=61.5 coverage=98.72611464968153)
RIBOSOMAL_S7 (db=PatternScan db_id=PS00052 from=20 to=46 evalue=0.0 interpro_id=IPR020606 interpro_description=Ribosomal protein S7, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412))
RBG1351_17_16
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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11951..14044
DNA (2094bp) protein (698aa)
translation elongation factor G; K02355 elongation factor G Tax=RBG_13_Chloroflexi_51_52_curated
translation elongation factor G
translation elongation factor G
Elongation factor G n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1C2_DEHLB (db=UNIREF evalue=3.8e-261 bit_score=906.4 identity=62.9 coverage=99.2836676217765)
RBG1351_17_17
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

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14037..14345
DNA (309bp) protein (103aa)
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 Tax=RBG_16_Chloroflexi_50_11_curated
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 n=5 Tax=Dehalococcoides mccartyi RepID=RS10_DEHE1 (db=UNIREF evalue=7.1e-39 bit_score=165.2 identity=81.4 coverage=98.05825242718447)
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=29 to=44 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RBG1351_17_18
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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14363..14998
DNA (636bp) protein (212aa)
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RBG_13_Chloroflexi_51_52_curated
50S ribosomal protein L3
50S ribosomal protein L3 n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1C0_DEHLB (db=UNIREF evalue=1.3e-66 bit_score=258.5 identity=62.4 coverage=97.16981132075472)
RIBOSOMAL_L3 (db=PatternScan db_id=PS00474 from=101 to=124 evalue=0.0 interpro_id=IPR019926 interpro_description=Ribosomal protein L3, conserved site)
RBG1351_17_19
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists


15000..15656
DNA (657bp) protein (219aa)
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RBG_13_Chloroflexi_51_52_curated
rplD; 50S ribosomal protein L4
50S ribosomal protein L4 n=5 Tax=Dehalococcoides mccartyi RepID=RL4_DEHE1 (db=UNIREF evalue=2.6e-67 bit_score=260.8 identity=60.4 coverage=94.06392694063926)
no description (db=Gene3D db_id=G3DSA:3.40.1370.10 from=1 to=37 evalue=0.00032 interpro_id=IPR023574 interpro_description=Ribosomal protein L4 domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RBG1351_17_20
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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15643..15927
DNA (285bp) protein (95aa)
50S ribosomal protein L25; K02892 large subunit ribosomal protein L23 Tax=RBG_13_Chloroflexi_51_52_curated
50S ribosomal protein L25
50S ribosomal protein L23 n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1B8_DEHLB (db=UNIREF evalue=3.9e-23 bit_score=112.8 identity=60.6 coverage=97.89473684210527)
RBG1351_17_21
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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15991..16773
DNA (783bp) protein (261aa)
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RBG_13_Chloroflexi_51_52_curated
rplB; 50S ribosomal protein L2
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 n=5 Tax=Dehalococcoides mccartyi RepID=RL2_DEHE1 (db=UNIREF evalue=5.9e-106 bit_score=389.4 identity=69.8 coverage=97.31800766283524)
RBG1351_17_22
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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16791..17063
DNA (273bp) protein (91aa)
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=RBG_13_Chloroflexi_51_52_curated
30S ribosomal protein S19
30S ribosomal protein S19 n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1B6_DEHLB (db=UNIREF evalue=1.8e-30 bit_score=137.1 identity=74.7 coverage=90.10989010989012)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
RBG1351_17_23
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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17086..17424
DNA (339bp) protein (113aa)
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=RBG_13_Chloroflexi_51_52_curated
50S ribosomal protein L22 n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1B5_DEHLB (db=UNIREF evalue=3.2e-32 bit_score=143.3 identity=65.2 coverage=98.23008849557522)
50S ribosomal protein L22
RIBOSOMAL_L22 (db=PatternScan db_id=PS00464 from=83 to=107 evalue=0.0 interpro_id=IPR018260 interpro_description=Ribosomal protein L22/L17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RBG1351_17_24
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists


17425..18537
DNA (1113bp) protein (371aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RBG_13_Chloroflexi_51_52_curated
rpsC; 30S ribosomal protein S3
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 n=5 Tax=Dehalococcoides mccartyi RepID=RS3_DEHSC (db=UNIREF evalue=2.1e-85 bit_score=321.6 identity=60.9 coverage=72.50673854447439)
RBG1351_17_25
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists


18524..19003
DNA (480bp) protein (160aa)
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RBG_13_Chloroflexi_51_52_curated
50S ribosomal protein L16
50S ribosomal protein L16 n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1B3_DEHLB (db=UNIREF evalue=1.9e-51 bit_score=207.6 identity=62.7 coverage=90.0)
RIBOSOMAL_L16_2 (db=PatternScan db_id=PS00701 from=95 to=106 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RBG1351_17_26
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists


19013..19213
DNA (201bp) protein (67aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RBG_13_Chloroflexi_51_52_curated
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 n=5 Tax=Dehalococcoides mccartyi RepID=RL29_DEHE1 (db=UNIREF evalue=6.3e-12 bit_score=75.1 identity=52.3 coverage=95.52238805970148)
L29: ribosomal protein L29 (db=HMMTigr db_id=TIGR00012 from=6 to=61 evalue=1.1e-16 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RBG1351_17_27
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists


19225..19509
DNA (285bp) protein (95aa)
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RBG_13_Chloroflexi_51_52_curated
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 n=3 Tax=Chloroflexus RepID=A9WH75_CHLAA (db=UNIREF evalue=5.0e-23 bit_score=112.5 identity=67.9 coverage=86.31578947368422)
RIBOSOMAL_S17 (db=PatternScan db_id=PS00056 from=56 to=68 evalue=0.0 interpro_id=IPR019979 interpro_description=Ribosomal protein S17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RBG1351_17_28
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists


19528..19896
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RBG_13_Chloroflexi_51_52_curated
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 n=16 Tax=Firmicutes RepID=RL14_CLOPH (db=UNIREF evalue=3.3e-43 bit_score=179.9 identity=73.8 coverage=98.3739837398374)
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=60 to=86 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
RBG1351_17_29
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists


19910..20221
DNA (312bp) protein (104aa)
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RBG_13_Chloroflexi_51_52_curated
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 n=5 Tax=Dehalococcoides mccartyi RepID=RL24_DEHE1 (db=UNIREF evalue=4.4e-36 bit_score=156.0 identity=68.9 coverage=98.07692307692307)
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=6 to=23 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RBG1351_17_30
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists


20222..20773
DNA (552bp) protein (184aa)
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RBG_13_Chloroflexi_51_52_curated
50S ribosomal protein L5
50S ribosomal protein L5 n=11 Tax=Thermoanaerobacteraceae RepID=RL5_THEP3 (db=UNIREF evalue=2.7e-65 bit_score=253.8 identity=66.5 coverage=96.73913043478261)
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=57 to=73 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying items 1-30 of 53 in total

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