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RBG1351_18

Alias: RBG_1351c3_18

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
RBG1351_18_1
RBG_13_Chloroflexi_52_12_curated, Chloroflexi, Bacteria

Not on your lists

1..231
-----------------
DNA (231bp)
protein (77aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=74)
RBG1351_18_2
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

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309..794
-----------------
DNA (486bp)
protein (162aa)
hypothetical protein
Rossmann fold nucleotide-binding protein-like protein n=3 Tax=Dehalococcoides mccartyi RepID=A5FRM6_DEHSB (db=UNIREF evalue=1.4e-52 bit_score=211.5 identity=66.7 coverage=97.53086419753086)
seg (db=Seg db_id=seg from=13 to=36)
seg (db=Seg db_id=seg from=40 to=59)
RBG1351_18_3
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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814..2100
-----------------
DNA (1287bp)
protein (429aa)
eno; phosphopyruvate hydratase (EC:4.2.1.11)
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=5 Tax=Dehalococcoides mccartyi RepID=ENO_DEHSC (db=UNIREF evalue=1.1e-170 bit_score=605.1 identity=70.0 coverage=99.06759906759906)
UniRef90_Q3ZX11 Enolase n=5 Tax=Dehalococcoides mccartyi RepID=ENO_DEHSC (db=UNIREF) rbh
RBG1351_18_4
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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2131..3039
-----------------
DNA (909bp)
protein (303aa)
hypothetical protein
GCN5-related N-acetyltransferase n=1 Tax=Cellulomonas fimi ATCC 484 RepID=F4GZT9_CELFA (db=UNIREF evalue=2.3e-45 bit_score=188.3 identity=36.9 coverage=91.74917491749174)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=56 to=297 evalue=2.2e-18 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=212 to=299 evalue=0.00011 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
RBG1351_18_5
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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3050..4042
-----------------
DNA (993bp)
protein (331aa)
beta-lactamase domain-containing protein
Beta-lactamase domain protein n=1 Tax=Thermobispora bispora DSM 43833 RepID=D6Y6U6_THEBD (db=UNIREF evalue=8.6e-62 bit_score=243.0 identity=38.0 coverage=95.46827794561933)
seg (db=Seg db_id=seg from=145 to=162)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=1 to=283 evalue=1.5e-44)
RBG1351_18_6
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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4058..5065
-----------------
DNA (1008bp)
protein (336aa)
2-hydroxyglutaryl-CoA dehydratase subunit D
2-hydroxyglutaryl-CoA dehydratase subunit D
2-hydroxyglutaryl-CoA dehydratase, D-component n=3 Tax=Dehalococcoides mccartyi RepID=A5FRM3_DEHSB (db=UNIREF evalue=4.9e-121 bit_score=439.9 identity=62.7 coverage=97.02380952380952)
UniRef90_A5FRM3 2-hydroxyglutaryl-CoA dehydratase, D-component n=3 Tax=Dehalococcoides mccartyi RepID=A5FRM3_DEHSB (db=UNIREF) rbh
RBG1351_18_7
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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5109..6122
-----------------
DNA (1014bp)
protein (338aa)
type I glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
type I glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=2 Tax=Dictyoglomus RepID=B5YFG4_DICT6 (db=UNIREF evalue=2.0e-130 bit_score=471.1 identity=67.3 coverage=98.81656804733728)
GAPDH (db=PatternScan db_id=PS00071 from=152 to=159 evalue=0.0 interpro_id=IPR020830 interpro_description=Glyceraldehyde 3-phosphate dehydrogenase, active site GO=Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620), Biological Process: oxidation-reduction process (GO:0055114))
RBG1351_18_8
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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6256..7431
-----------------
DNA (1176bp)
protein (392aa)
tubulin/FtsZ family protein
Tubulin/FtsZ, GTPase n=5 Tax=Dehalococcoides mccartyi RepID=A5FRM1_DEHSB (db=UNIREF evalue=7.7e-134 bit_score=482.6 identity=59.6 coverage=99.48979591836735)
TUBULIN (db=PatternScan db_id=PS00227 from=115 to=121 evalue=0.0 interpro_id=IPR017975 interpro_description=Tubulin, conserved site GO=Molecular Function: GTP binding (GO:0005525), Cellular Component: microtubule (GO:0005874), Biological Process: microtubule-based process (GO:0007017))
seg (db=Seg db_id=seg from=112 to=124)
RBG1351_18_9
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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comp(7584..8066)
-----------------
DNA (483bp)
protein (161aa)
coiled-coil (db=Coil db_id=coil from=31 to=52 evalue=NA)
coiled-coil (db=Coil db_id=coil from=82 to=103 evalue=NA)
coiled-coil (db=Coil db_id=coil from=104 to=125 evalue=NA)
seg (db=Seg db_id=seg from=117 to=134)
RBG1351_18_10
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

comp(8241..10427)
-----------------
DNA (2187bp)
protein (729aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Volvox carteri RepID=D8U7Y7_VOLCA (db=UNIREF evalue=4.5e-55 bit_score=221.9 identity=28.7 coverage=93.00411522633745)
coiled-coil (db=Coil db_id=coil from=47 to=101 evalue=NA)
coiled-coil (db=Coil db_id=coil from=650 to=671 evalue=NA)
RBG1351_18_11
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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10644..11816
-----------------
DNA (1173bp)
protein (391aa)
cell dividion protein FtsZ
cell dividion protein FtsZ
Tubulin/FtsZ, GTPase n=5 Tax=Dehalococcoides mccartyi RepID=A5FRM1_DEHSB (db=UNIREF evalue=5.1e-146 bit_score=523.1 identity=63.9 coverage=99.48849104859335)
coiled-coil (db=Coil db_id=coil from=362 to=383 evalue=NA)
RBG1351_18_12
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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11854..12441
-----------------
DNA (588bp)
protein (196aa)
seg (db=Seg db_id=seg from=57 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=87 to=106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=46)
RBG1351_18_13
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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12472..14094
-----------------
DNA (1623bp)
protein (541aa)
DNA polymerase III subunit gamma/tau
DNA polymerase III subunit gamma/tau
DNA polymerase III, gamma and tau subunits, putative n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z8X2_DEHE1 (db=UNIREF evalue=2.2e-155 bit_score=554.7 identity=51.3 coverage=99.26062846580407)
seg (db=Seg db_id=seg from=363 to=374)
RBG1351_18_14
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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14091..14396
-----------------
DNA (306bp)
protein (102aa)
hypothetical protein
UPF0133 protein N47_H23170 n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YAA1_9DELT (db=UNIREF evalue=3.8e-24 bit_score=116.3 identity=58.3 coverage=93.13725490196079)
coiled-coil (db=Coil db_id=coil from=2 to=30 evalue=NA)
seg (db=Seg db_id=seg from=74 to=87)
RBG1351_18_15
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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14409..15026
-----------------
DNA (618bp)
protein (206aa)
recombination protein RecR
Recombination protein RecR n=5 Tax=Dehalococcoides mccartyi RepID=RECR_DEHE1 (db=UNIREF evalue=1.0e-68 bit_score=265.4 identity=60.6 coverage=97.57281553398059)
RECR (db=PatternScan db_id=PS01300 from=64 to=85 evalue=0.0 interpro_id=IPR015967 interpro_description=Recombination protein RecR, conserved site GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
recR: recombination protein RecR (db=HMMTigr db_id=TIGR00615 from=8 to=203 evalue=1.8e-96 interpro_id=IPR000093 interpro_description=DNA recombination protein RecR GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
RBG1351_18_16
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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15058..15456
-----------------
DNA (399bp)
protein (133aa)
Acetyltransferase family protein n=2 Tax=Brevibacillus laterosporus RepID=H0UE57_BRELA (db=UNIREF evalue=1.5e-09 bit_score=68.2 identity=32.5 coverage=81.95488721804512)
ypeA; acetyltransferase YpeA (EC:2.3.1.-)
seg (db=Seg db_id=seg from=79 to=96)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=131 evalue=1.6e-26 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
RBG1351_18_17
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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15634..16203
-----------------
DNA (570bp)
protein (190aa)
type 11 methyltransferase
Methyltransferase type 11 n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GI62_METPE (db=UNIREF evalue=5.7e-50 bit_score=203.0 identity=54.4 coverage=94.21052631578948)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=23 to=176 evalue=1.8e-24)
RBG1351_18_18
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

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16229..17011
-----------------
DNA (783bp)
protein (261aa)
recO; recombinational DNA repair protein (RecF pathway)
DNA repair protein RecO n=1 Tax=Dehalococcoides sp. VS RepID=D2BH72_DEHSV (db=UNIREF evalue=2.3e-65 bit_score=254.6 identity=48.4 coverage=95.01915708812261)
reco: DNA repair protein RecO (db=HMMTigr db_id=TIGR00613 from=7 to=249 evalue=1.4e-52 interpro_id=IPR003717 interpro_description=Recombination protein O, RecO GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
(db=HMMPfam db_id=PF02565 from=88 to=242 evalue=1.5e-22 interpro_id=IPR003717 interpro_description=Recombination protein O, RecO GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
RBG1351_18_19
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

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comp(17034..18272)
-----------------
DNA (1239bp)
protein (413aa)
serS; serine--tRNA ligase (EC:6.1.1.11)
serS; serine--tRNA ligase (EC:6.1.1.11)
Serine--tRNA ligase n=5 Tax=Dehalococcoides mccartyi RepID=SYS_DEHE1 (db=UNIREF evalue=4.9e-155 bit_score=553.1 identity=64.3 coverage=99.27360774818402)
coiled-coil (db=Coil db_id=coil from=44 to=93 evalue=NA)
RBG1351_18_20
RBG_13_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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comp(18290..18742)
-----------------
DNA (453bp)
protein (151aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JG38_9ARCH (db=UNIREF evalue=6.5e-57 bit_score=225.7 identity=65.3 coverage=98.67549668874173)
hypothetical protein
RBG1351_18_21
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

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comp(18739..20241)
-----------------
DNA (1503bp)
protein (501aa)
lysyl-tRNA synthetase
lysyl-tRNA synthetase
Lysine--tRNA ligase n=5 Tax=Dehalococcoides mccartyi RepID=SYK_DEHSC (db=UNIREF evalue=2.0e-158 bit_score=564.7 identity=55.6 coverage=98.00399201596807)
UniRef90_Q3ZWX9 Lysine--tRNA ligase n=5 Tax=Dehalococcoides mccartyi RepID=SYK_DEHSC (db=UNIREF) rbh
RBG1351_18_22
RBG_13_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

20536..20889
-----------------
DNA (354bp)
protein (118aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
seg (db=Seg db_id=seg from=3 to=17)
RBG1351_18_23
RBG_16_Chloroflexi_50_11_curated, Chloroflexi, Bacteria

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21050..21322
-----------------
DNA (273bp)
protein (91aa)
21050..21322 + ( gc_cont=0.505)
RBG1351_18_24
unknown

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comp(21344..21484)
-----------------
DNA (141bp)
protein (47aa)
21344..21484 - ( gc_cont=0.404)
RBG1351_18_25
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

21575..22687
-----------------
DNA (1113bp)
protein (371aa)
major facilitator superfamily protein
Major facilitator superfamily MFS_1 n=1 Tax=Desulfotomaculum kuznetsovii DSM 6115 RepID=F6CIL0_DESK7 (db=UNIREF evalue=2.2e-66 bit_score=258.5 identity=37.9 coverage=93.53099730458221)
transmembrane_regions (db=TMHMM db_id=tmhmm from=312 to=334)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
RBG1351_18_26
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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comp(23275..25653)
-----------------
DNA (2379bp)
protein (793aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
Multi-sensor signal transduction histidine kinase n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UQE0_ROSS1 (db=UNIREF evalue=1.9e-46 bit_score=193.4 identity=42.9 coverage=27.994955863808325)
seg (db=Seg db_id=seg from=161 to=177)
transmembrane_regions (db=TMHMM db_id=tmhmm from=355 to=377)
RBG1351_18_27
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(25669..26622)
-----------------
DNA (954bp)
protein (318aa)
polyprenyl synthetase
Polyprenyl synthetase n=1 Tax=Syntrophobotulus glycolicus DSM 8271 RepID=F0SXT3_SYNGF (db=UNIREF evalue=3.2e-29 bit_score=134.8 identity=28.4 coverage=95.28301886792453)
seg (db=Seg db_id=seg from=7 to=18)
no description (db=Gene3D db_id=G3DSA:1.10.600.10 from=53 to=317 evalue=2.2e-30 interpro_id=IPR008949 interpro_description=Terpenoid synthase)
RBG1351_18_28

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comp(26640..26858)
-----------------
DNA (219bp)
protein (73aa)
26640..26858 - ( gc_cont=0.420)
RBG1351_18_29
RBG_13_Chloroflexi_52_12_curated, Chloroflexi, Bacteria

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comp(26924..27325)
-----------------
DNA (402bp)
protein (134aa)
XRE family transcriptional regulator
Helix-turn-helix domain protein n=5 Tax=Dehalococcoides mccartyi RepID=A5FSC6_DEHSB (db=UNIREF evalue=1.7e-29 bit_score=134.4 identity=56.7 coverage=87.31343283582089)
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=14 to=73 evalue=1.8e-12 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=17 to=72 evalue=3.9e-10 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
RBG1351_18_30

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27496..28197
-----------------
DNA (702bp)
protein (234aa)
putative two-component response regulator
Putative two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB66_GEMAT (db=UNIREF evalue=2.0e-25 bit_score=121.7 identity=36.7 coverage=79.05982905982906)
seg (db=Seg db_id=seg from=200 to=205)
SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) (db=HMMPanther db_id=PTHR23283:SF47 from=1 to=123 evalue=5.3e-21)
Displaying items 1-30 of 33 in total

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