ggKbase home page

RBGRP_108

Alias: scaffold_12542

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBGRP_108_1
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2..808
DNA (807bp) protein (269aa)
rpoB; DNA-directed RNA polymerase beta chain (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RBG_16_Planctomycetes_64_10_curated
rpoB; DNA-directed RNA polymerase beta chain (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=3 Tax=Rhodopirellula baltica RepID=RPOB_RHOBA
RBGRP_108_2
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

834..4922
DNA (4089bp) protein (1363aa)
DNA-directed RNA polymerase subunit beta'
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5N7_PIRSD
RBGRP_108_3
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4877..5236
DNA (360bp) protein (120aa)
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RBG_16_Planctomycetes_64_10_curated
DNA-directed RNA polymerase subunit beta'
DNA-directed RNA polymerase subunit beta' n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5N7_PIRSD
RBGRP_108_4
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


5326..5694
DNA (369bp) protein (123aa)
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RBG_16_Planctomycetes_64_10_curated
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 n=4 Tax=Planctomycetaceae RepID=RS12_RHOBA
RBGRP_108_5
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


5788..6258
DNA (471bp) protein (157aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=RBG_16_Planctomycetes_64_10_curated
30S ribosomal protein S7
30S ribosomal protein S7 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5N5_PIRSD
RBGRP_108_6
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6168..6707)
DNA (540bp) protein (180aa)
hypothetical protein Tax=RBG_16_Planctomycetes_64_10_curated
Putative uncharacterized protein n=1 Tax=uncultured bacterium Rlip1 RepID=C0K072_9BACT
RBGRP_108_7
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6724..8391
DNA (1668bp) protein (556aa)
translation elongation factor G; K02355 elongation factor G Tax=RBG_16_Planctomycetes_64_10_curated
translation elongation factor G
Translation elongation factor G n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5N4_PIRSD
RBGRP_108_8
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


8520..8885
DNA (366bp) protein (122aa)
30S ribosomal protein S10P; K02946 small subunit ribosomal protein S10 Tax=RBG_16_Planctomycetes_64_10_curated
30S ribosomal protein S10 n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CGM9_9PLAN
30S ribosomal protein S10P
RBGRP_108_9
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


9150..9836
DNA (687bp) protein (229aa)
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RBG_16_Planctomycetes_64_10_curated
50S ribosomal protein L3
50S ribosomal protein L3 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5T7_PIRSD
RBGRP_108_10
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


9880..10521
DNA (642bp) protein (214aa)
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RBG_16_Planctomycetes_64_10_curated
50S ribosomal protein L4
50S ribosomal protein L4 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5T8_PIRSD
RBGRP_108_11
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


10533..10847
DNA (315bp) protein (105aa)
50S ribosomal protein L25; K02892 large subunit ribosomal protein L23 Tax=RBG_16_Planctomycetes_64_10_curated
50S ribosomal protein L25
50S ribosomal protein L23 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5T9_PIRSD
RBGRP_108_12
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


10873..11736
DNA (864bp) protein (288aa)
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RBG_16_Planctomycetes_64_10_curated
50S ribosomal protein L2 n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLG8_9PLAN
50S ribosomal protein L2
RBGRP_108_13
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


11830..12099
DNA (270bp) protein (90aa)
rpsS; ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=RBG_16_Planctomycetes_64_10_curated
rpsS; ribosomal protein S19
30S ribosomal protein S19 n=3 Tax=Rhodopirellula baltica RepID=RS19_RHOBA
RBGRP_108_14
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


12108..12446
DNA (339bp) protein (113aa)
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=RBG_16_Planctomycetes_64_10_curated
50S ribosomal protein L22
50S ribosomal protein L22 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5U2_PIRSD
RBGRP_108_15
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


12465..13160
DNA (696bp) protein (232aa)
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RBG_16_Planctomycetes_64_10_curated
30S ribosomal protein S3
30S ribosomal protein S3 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5U3_PIRSD
RBGRP_108_16
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


13099..13605
DNA (507bp) protein (169aa)
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RBG_13_Planctomycetes_63_9_curated
50S ribosomal protein L16
50S ribosomal protein L16 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5U4_PIRSD
RBGRP_108_17
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


13742..13948
DNA (207bp) protein (69aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RBG_16_Planctomycetes_64_10_curated
50S ribosomal protein L29 n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLG3_9PLAN
50S ribosomal protein L29
RBGRP_108_18
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


14005..14292
DNA (288bp) protein (96aa)
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RBG_16_Planctomycetes_64_10_curated
30S ribosomal protein S17 n=4 Tax=Rhodopirellula baltica RepID=RS17_RHOBA
rpsQ; 30S ribosomal protein S17
RBGRP_108_19
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


14300..14668
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RBG_16_Planctomycetes_64_10_curated
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 n=3 Tax=Rhodopirellula baltica RepID=RL14_RHOBA
RBGRP_108_20
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


14670..15017
DNA (348bp) protein (116aa)
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RBG_16_Planctomycetes_64_10_curated
50S ribosomal protein L24
50S ribosomal protein L24 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5U8_PIRSD
RBGRP_108_21
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


15082..15648
DNA (567bp) protein (189aa)
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RBG_16_Planctomycetes_64_10_curated
50S ribosomal protein L5
50S ribosomal protein L5 n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLF9_9PLAN
RBGRP_108_22
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


15871..16266
DNA (396bp) protein (132aa)
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RBG_16_Planctomycetes_64_10_curated
30S ribosomal protein S8 n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLF7_9PLAN
30S ribosomal protein S8
RBGRP_108_23
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


16351..16578
DNA (228bp) protein (76aa)
Suspect SCG annotation. See neighboring gene [RBGRP_108_24].
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RBG_16_Planctomycetes_64_12_curated
50S ribosomal protein L6
50S ribosomal protein L6 n=1 Tax=Singulisphaera acidiphila DSM 18658 RepID=H1MVB5_9PLAN
RBGRP_108_24
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


16572..16886
DNA (315bp) protein (105aa)
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RBG_16_Planctomycetes_64_12_curated
50S ribosomal protein L6 n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLF6_9PLAN
rplF; 50S ribosomal protein L6
RBGRP_108_25
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


16899..17267
DNA (369bp) protein (123aa)
50S ribosomal protein L18 Tax=RBG_16_Planctomycetes_64_10_curated
50S ribosomal protein L18 n=1 Tax=Singulisphaera acidiphila DSM 18658 RepID=H1MVB4_9PLAN
50S ribosomal protein L18
RBGRP_108_26
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


17270..17752
DNA (483bp) protein (161aa)
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RBG_16_Planctomycetes_64_10_curated
30S ribosomal protein S5
30S ribosomal protein S5 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R6I7_PIRSD
RBGRP_108_27
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


17749..18225
DNA (477bp) protein (159aa)
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RBG_16_Planctomycetes_64_10_curated
50S ribosomal protein L15 n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLF2_9PLAN
rplO; 50S ribosomal protein L15
RBGRP_108_28
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


18394..19731
DNA (1338bp) protein (446aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RBG_16_Planctomycetes_64_10_curated
Protein translocase subunit SecY n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLF1_9PLAN
secY; preprotein translocase subunit SecY
RBGRP_108_29
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

19751..20563
DNA (813bp) protein (271aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RBG_16_Planctomycetes_64_10_curated
Methionine aminopeptidase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TNJ5_9CHLR
methionine aminopeptidase (EC:3.4.11.18)
RBGRP_108_30
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


20941..21324
DNA (384bp) protein (128aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Planctomycetes_64_10_curated
30S ribosomal protein S13
Ribosomal protein S13 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R6J2_PIRSD
Displaying items 1-30 of 46 in total

View Taxonomy