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RBGRP_144

Alias: scaffold_30371

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBGRP_144_1

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comp(1..1218)
DNA (1218bp) protein (406aa)
Marine sediment metagenome DNA, contig: S06H3_S08884 {ECO:0000313|EMBL:GAI36411.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
response regulator receiver modulated metal dependent phosphohydrolase
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNN3_HALO1
RBGRP_144_2

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comp(1256..4294)
DNA (3039bp) protein (1013aa)
Marine sediment metagenome DNA, contig: S06H3_C00639 {ECO:0000313|EMBL:GAI00839.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Histidine kinase (EC:2.7.13.3)
Putative Histidine kinase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGK7_9BACT
RBGRP_144_3

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comp(4291..4797)
DNA (507bp) protein (169aa)
Marine sediment metagenome DNA, contig: S06H3_L03659 {ECO:0000313|EMBL:GAI15706.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
GH3 auxin-responsive promoter
GH3 auxin-responsive promoter n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1C7_DEHLB
RBGRP_144_4
Dehalogenimonas lykanthroporepellens, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

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comp(5076..5897)
DNA (822bp) protein (274aa)
GH3 auxin-responsive promoter
GH3 auxin-responsive promoter {ECO:0000313|EMBL:ADJ26405.1}; TaxID=552811 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalogenimonas.;" source="Dehalogenimonas lykanthroporepellens (strain ATCC
GH3 auxin-responsive promoter n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1C7_DEHLB
RBGRP_144_5
Dehalogenimonas sp. WBC-2, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

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comp(5894..6454)
DNA (561bp) protein (187aa)
Membrane protein putative {ECO:0000313|EMBL:AKG53063.1}; TaxID=943347 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalogenimonas.;" source="Dehalogenimonas sp. WBC-2.;"
hypothetical protein
Putative uncharacterized protein n=4 Tax=Dehalococcoides mccartyi RepID=A5FPW1_DEHSB
RBGRP_144_6

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comp(6506..7030)
DNA (525bp) protein (175aa)
Marine sediment metagenome DNA, contig: S06H3_L04881 {ECO:0000313|EMBL:GAI14517.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
response regulator receiver protein
Response regulator receiver protein n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K3U6_DEHLB
RBGRP_144_7
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

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7516..7944
DNA (429bp) protein (143aa)
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RBG_13_Chloroflexi_50_10_curated
30S ribosomal protein S12 n=2 Tax=Sphaerobacteraceae RepID=I4EER2_9CHLR
rpsL; 30S ribosomal protein S12
RBGRP_144_8

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7957..8427
DNA (471bp) protein (157aa)
Marine sediment metagenome DNA, contig: S03H2_C02483 {ECO:0000313|EMBL:GAH28752.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
30S ribosomal protein S7
30S ribosomal protein S7 n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2K1_SPHTD
RBGRP_144_9
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

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8421..10514
DNA (2094bp) protein (698aa)
translation elongation factor G; K02355 elongation factor G Tax=RBG_13_Chloroflexi_50_10_curated
elongation factor G
Elongation factor G n=2 Tax=Roseiflexus RepID=EFG_ROSCS
RBGRP_144_10

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10515..10823
DNA (309bp) protein (103aa)
Marine sediment metagenome DNA, contig: S01H1_S28824 {ECO:0000313|EMBL:GAG40859.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
30S ribosomal protein S10
30S ribosomal protein S10 n=4 Tax=Desulfitobacterium RepID=RS10_DESHD
RBGRP_144_11
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

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10861..11478
DNA (618bp) protein (206aa)
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RBG_13_Chloroflexi_52_14_curated
50S ribosomal protein L3 n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1C0_DEHLB
50S ribosomal protein L3
RBGRP_144_12
CG_Dehalo_02, Dehalococcoidia, Chloroflexi, Bacteria

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11492..12133
DNA (642bp) protein (214aa)
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=CG_Dehalo_02
50S ribosomal protein L4 n=5 Tax=Dehalococcoides mccartyi RepID=RL4_DEHE1
rplD; 50S ribosomal protein L4
RBGRP_144_13
RBG_19FT_COMBO_Chloroflexi_47_15_curated, Chloroflexi, Bacteria

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12130..12414
DNA (285bp) protein (95aa)
50S ribosomal protein L25; K02892 large subunit ribosomal protein L23 Tax=RBG_19FT_COMBO_Chloroflexi_47_15_curated
50S ribosomal protein L23 n=1 Tax=Dialister invisus DSM 15470 RepID=C9LN32_9FIRM
50S ribosomal protein L25
RBGRP_144_14
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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12425..13255
DNA (831bp) protein (277aa)
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RBG_13_Chloroflexi_56_8b_curated
50S ribosomal protein L2 n=1 Tax=Anaerolinea thermophila UNI-1 RepID=E8N3M7_ANATU
rplB; 50S ribosomal protein L2
RBGRP_144_15
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

Not on your lists


13257..13547
DNA (291bp) protein (97aa)
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=RBG_13_Chloroflexi_52_14_curated
30S ribosomal protein S19
Ribosomal protein S19 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFD0_THET1
RBGRP_144_16
RBG_13_Chloroflexi_52_12_curated, Chloroflexi, Bacteria

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13567..13902
DNA (336bp) protein (112aa)
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=RBG_13_Chloroflexi_52_12_curated
50S ribosomal protein L22
50S ribosomal protein L22 n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1B5_DEHLB
RBGRP_144_17
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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13903..14481
DNA (579bp) protein (193aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RBG_16_Chloroflexi_50_9_curated
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 n=5 Tax=Dehalococcoides mccartyi RepID=RS3_DEHSC
RBGRP_144_18
unknown

Not on your lists

14463..14699
DNA (237bp) protein (79aa)

This feature has no annotations

RBGRP_144_19
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

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14712..15092
DNA (381bp) protein (127aa)
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RBG_13_Chloroflexi_52_14_curated
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 n=2 Tax=Roseiflexus RepID=RL16_ROSCS
RBGRP_144_20
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

Not on your lists


15147..15347
DNA (201bp) protein (67aa)
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RBG_13_Chloroflexi_52_14_curated
50S ribosomal protein L29
50S ribosomal protein L29 n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D8K1B2_DEHLB
RBGRP_144_21
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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15352..15621
DNA (270bp) protein (90aa)
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000255|HAMAP-Rule:MF_01345}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carbox
30S ribosomal protein S17 n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RS17_CARHZ
RBGRP_144_22
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

Not on your lists


15633..16001
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RBG_13_Chloroflexi_54_9_curated
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 n=1 Tax=Halothermothrix orenii H 168 RepID=RL14_HALOH
Displaying 22 items

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