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RBGRP_148

Alias: scaffold_39454

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBGRP_148_1
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(170..775)
DNA (606bp) protein (202aa)
50S ribosomal protein L17P; K02879 large subunit ribosomal protein L17 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 n=3 Tax=Methylophilaceae RepID=RL17_METFK
RBGRP_148_2
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(791..1801)
DNA (1011bp) protein (337aa)
rpoA; DNA-directed RNA polymerase subunit alpha Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rpoA; DNA-directed RNA polymerase subunit alpha
DNA-directed RNA polymerase subunit alpha n=1 Tax=Alteromonas sp. S89 RepID=UPI000255919B
RBGRP_148_3
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1830..2456)
DNA (627bp) protein (209aa)
rpsD; 30S ribosomal protein S4 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
Ribosomal protein S4 n=1 Tax=Cycloclasticus sp. P1 RepID=K0C842_9GAMM
Ribosomal protein S4
RBGRP_148_4
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2674..2973)
DNA (300bp) protein (100aa)
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=RS11_THIDA
RBGRP_148_5
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2991..3368)
DNA (378bp) protein (126aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=RS13_NITMU
RBGRP_148_6
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3457..3570)
DNA (114bp) protein (38aa)
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36 Tax=RBG_16_Gamma2_65_34_curated
rpmJ; ribosomal protein L36
50S ribosomal protein L36 n=24 Tax=Francisella RepID=RL36_FRAT1
RBGRP_148_7
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3643..4986)
DNA (1344bp) protein (448aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
Protein translocase subunit SecY n=2 Tax=sulfur-oxidizing symbionts RepID=G2DCN5_9GAMM
secY; preprotein translocase subunit SecY
RBGRP_148_8
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5048..5506)
DNA (459bp) protein (153aa)
50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
50S ribosomal protein L15
50S ribosomal protein L15 n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYX4_9BURK
RBGRP_148_9
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5789..5980)
DNA (192bp) protein (64aa)
rpmD; 50S ribosomal protein L30 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
50S ribosomal protein L30
Ribosomal protein L30 n=1 Tax=Alcanivorax sp. W11-5 RepID=K2FRK0_9GAMM
RBGRP_148_10
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5989..6498)
DNA (510bp) protein (170aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 n=4 Tax=Nitrosococcus RepID=RS5_NITOC
RBGRP_148_11
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6508..6864)
DNA (357bp) protein (119aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 n=3 Tax=Methylophilaceae RepID=RL18_METFK
RBGRP_148_12
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6878..7411)
DNA (534bp) protein (178aa)
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 n=1 Tax=Halorhodospira halophila SL1 RepID=RL6_HALHL
RBGRP_148_13
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7437..7829)
DNA (393bp) protein (131aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 n=20 Tax=Shewanella RepID=RS8_SHEAM
RBGRP_148_14
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7918..8223)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
30S ribosomal protein S14
30S ribosomal protein S14 n=1 Tax=Sulfuricella denitrificans skB26 RepID=K6V8U4_9PROT
RBGRP_148_15
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8231..8770)
DNA (540bp) protein (180aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rplE; large subunit ribosomal protein L5
50S ribosomal protein L5 n=1 Tax=Methylococcus capsulatus str. Bath RepID=RL5_METCA
RBGRP_148_16
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8905..9231)
DNA (327bp) protein (109aa)
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 n=1 Tax=Hahella chejuensis KCTC 2396 RepID=RL24_HAHCH
RBGRP_148_17
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9321..9689)
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
50S ribosomal protein L14 n=2 Tax=Gammaproteobacteria RepID=E8LN79_9GAMM
rplN; 50S ribosomal protein L14
RBGRP_148_18
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9768..10046)
DNA (279bp) protein (93aa)
30S ribosomal protein S17 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
30S ribosomal protein S17 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIL4_9GAMM
30S ribosomal protein S17
RBGRP_148_19
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10053..10238)
DNA (186bp) protein (62aa)
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 n=7 Tax=Halomonadaceae RepID=RL29_CHRSD
RBGRP_148_20
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10247..10651)
DNA (405bp) protein (135aa)
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
50S ribosomal protein L16 n=1 Tax=Salinisphaera shabanensis E1L3A RepID=F7Q7Y5_9GAMM
50S ribosomal protein L16
RBGRP_148_21
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10757..11437)
DNA (681bp) protein (227aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 n=1 Tax=Methylomicrobium alcaliphilum 20Z RepID=G4STL2_META2
RBGRP_148_22
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11437..11820)
DNA (384bp) protein (128aa)
rplV; 50S ribosomal protein L22 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rplV; large subunit ribosomal protein L22
50S ribosomal protein L22P n=1 Tax=Sulfuricella denitrificans skB26 RepID=K6USK0_9PROT
RBGRP_148_23
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11828..12121)
DNA (294bp) protein (98aa)
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
Ribosomal protein S19 n=2 Tax=Nitrosomonas RepID=F9ZGV2_9PROT
30S ribosomal protein S19
RBGRP_148_24
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12134..13342)
DNA (1209bp) protein (403aa)
rplB; 50S ribosomal protein L2 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 n=2 Tax=Sulfuricella denitrificans skB26 RepID=K6V8V7_9PROT
RBGRP_148_25
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13339..13956)
DNA (618bp) protein (206aa)
rplD; 50S ribosomal protein L4 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
rplD; 50S ribosomal protein L4
50S ribosomal protein L4 n=8 Tax=Alteromonadaceae RepID=RL4_ALTMD
RBGRP_148_26
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14050..14706)
DNA (657bp) protein (219aa)
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
50S ribosomal protein L3
50S ribosomal protein L3 n=2 Tax=sulfur-oxidizing symbionts RepID=G2DCQ5_9GAMM
RBGRP_148_27
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14812..15123)
DNA (312bp) protein (104aa)
30S ribosomal protein S10 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
30S ribosomal protein S10
30S ribosomal protein S10 n=2 Tax=Gammaproteobacteria RepID=RS10_THISH
Displaying 27 items

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