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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(3..473)
-----------------
DNA (471bp)
protein (157aa)
DNA repair protein; K03630 DNA repair protein RadC Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA repair protein id=2726263 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
DNA repair protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(476..706)
-----------------
DNA (231bp)
protein (77aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1U7_9BACT
putative periplasmic or secreted lipoprotein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
putative periplasmic or secreted lipoprotein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(709..975)
-----------------
DNA (267bp)
protein (89aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1U0_9BACT
Uncharacterized protein family (UPF0150) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uncharacterized protein family (UPF0150)
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(991..1926)
-----------------
DNA (936bp)
protein (312aa)
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B06 RepID=UPI000379C8A8
dTDP-glucose 4,6-dehydratase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(2350..3279)
-----------------
DNA (930bp)
protein (310aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Geobacter sp. (strain M21) RepID=C6E0A7_GEOSM
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(3409..5835)
-----------------
DNA (2427bp)
protein (809aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump id=2160322 bin=GWE2_RBX1_39_32 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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6201..7589
-----------------
DNA (1389bp)
protein (463aa)
rumA-2; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-); K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rumA-2; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00036E9F08
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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7834..8034
-----------------
DNA (201bp)
protein (67aa)
Hypothetical conserved protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Hypothetical conserved protein id=4722429 bin=GWC2_Nitrospirae-rel_56_14 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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8034..8285
-----------------
DNA (252bp)
protein (84aa)
addiction module antitoxin Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Plasmid stabilization system protein id=4722431 bin=GWC2_Nitrospirae-rel_56_14 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
addiction module antitoxin
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_20028_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(8429..8779)
-----------------
DNA (351bp)
protein (117aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YI30_9DELT
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
Displaying 10 items

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