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S_scaffold_20

Alias: S_Methanogen_56_636_2

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Displaying items 1-30 of 60 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_20_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2..442
DNA (441bp) protein (147aa)
ATPase (PilT family) {ECO:0000313|EMBL:KCZ73550.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" sou
ATPase (PilT family)
S_scaffold_20_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(439..1200)
DNA (762bp) protein (254aa)
TIGR00268 family protein {ECO:0000313|EMBL:KCZ73437.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;"
TIGR00268 family protein
TIGR00268 family protein
S_scaffold_20_3
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1197..2189)
DNA (993bp) protein (331aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synth
Phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase
S_scaffold_20_4
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2191..3459)
DNA (1269bp) protein (423aa)
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate is
3-isopropylmalate dehydratase large subunit
S_scaffold_20_5
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3501..4889)
DNA (1389bp) protein (463aa)
pyruvate kinase (EC:2.7.1.40 2.7.9.2)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;
Pyruvate kinase
S_scaffold_20_6
Thermosipho melanesiensis, Thermosipho, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(5787..6488)
DNA (702bp) protein (234aa)
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABR30270.1}; TaxID=391009 species="Bacteria; Thermotogae; Thermotogales; Fervidobacteriaceae; Thermosipho.;" source="Thermosipho melanesiensis (strain BI429 /
Uncharacterized protein
S_scaffold_20_7
Thermosipho melanesiensis, Thermosipho, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(6489..9647)
DNA (3159bp) protein (1053aa)
HsdR family type I site-specific deoxyribonuclease
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:ABR30271.1}; TaxID=391009 species="Bacteria; Thermotogae; Thermotogales; Fervidobacteriaceae; Thermosipho.;" source="Thermosipho m
Type I site-specific deoxyribonuclease, HsdR family
S_scaffold_20_8
Persephonella marina, Persephonella, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(9657..11831)
DNA (2175bp) protein (725aa)
macrophage infection protein, MimD rbh
Macrophage infection protein, MimD {ECO:0000313|EMBL:ACO04649.1}; TaxID=123214 species="Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Persephonella.;" source="Persephonella marina (strain DSM
Macrophage infection protein, MimD
S_scaffold_20_9
Bacillus licheniformis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11828..13057)
DNA (1230bp) protein (410aa)
Uncharacterized protein {ECO:0000313|EMBL:EQM29525.1}; TaxID=1368424 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus licheniformis CG-B52.;"
type I restriction-modification system specificty subunit
Type I restriction modification DNA specificity domain protein
S_scaffold_20_10
Thermosipho melanesiensis, Thermosipho, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(13054..15468)
DNA (2415bp) protein (805aa)
type I restriction-modification system, M subunit rbh
Type I restriction-modification system, M subunit {ECO:0000313|EMBL:ABR30274.1}; TaxID=391009 species="Bacteria; Thermotogae; Thermotogales; Fervidobacteriaceae; Thermosipho.;" source="Thermosipho mel
Type I restriction-modification system, M subunit
S_scaffold_20_11

Not on your lists

comp(15663..18422)
DNA (2760bp) protein (920aa)
Marine sediment metagenome DNA, contig: S01H1_S00403 {ECO:0000313|EMBL:GAF87746.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein
Putative uncharacterized protein
S_scaffold_20_12
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18944..19912)
DNA (969bp) protein (323aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB48569.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanometh
Uncharacterized protein
S_scaffold_20_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19923..21566)
DNA (1644bp) protein (548aa)
Putative membrane-associated Zn-dependent protease {ECO:0000313|EMBL:KCZ72602.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Can
peptidase M50
Peptidase M50
S_scaffold_20_14
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

21690..22037
DNA (348bp) protein (116aa)
alpha-NAC-related protein
Nascent polypeptide-associated complex protein {ECO:0000256|HAMAP-Rule:MF_00814}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovo
Nascent polypeptide-associated complex protein
S_scaffold_20_15
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22034..24028)
DNA (1995bp) protein (665aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKF99667.1}; TaxID=2209 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina maze
Uncharacterized protein
S_scaffold_20_16
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

24339..25766
DNA (1428bp) protein (476aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB60456.1}; TaxID=1434115 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina m
Conserved protein
S_scaffold_20_17
Methanosarcina lacustris, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(25869..27164)
DNA (1296bp) protein (432aa)
CoB--CoM heterodisulfide reductase 2 iron-sulfur subunit D (EC:1.8.98.1)
CoB--CoM heterodisulfide reductase 2 iron-sulfur subunit D {ECO:0000313|EMBL:AKB73685.1}; EC=1.8.98.1 {ECO:0000313|EMBL:AKB73685.1};; TaxID=1434111 species="Archaea; Euryarchaeota; Methanomicrobia; Me
CoB--CoM heterodisulfide reductase 2 iron-sulfur subunit D
S_scaffold_20_18
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(27157..27945)
DNA (789bp) protein (263aa)
CoB-CoM heterodisulfide reductase, subunit E
CoB-CoM heterodisulfide reductase, subunit E {ECO:0000313|EMBL:AET64165.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source=
CoB-CoM heterodisulfide reductase, subunit E
S_scaffold_20_19
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28275..29186
DNA (912bp) protein (304aa)
thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
thioredoxin-disulfide reductase
Thioredoxin-disulfide reductase
S_scaffold_20_20
Methanothermobacter marburgensis, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(29170..29583)
DNA (414bp) protein (138aa)
DNA-binding protein Tfx; TaxID=79929 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.;" source="Methanothermobacter marburgensis (strain
transcription regulator
DNA-binding protein tfx
S_scaffold_20_21
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(29646..30668)
DNA (1023bp) protein (341aa)
Integral membrane protein {ECO:0000313|EMBL:AKB25769.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina
integral membrane protein
Putative uncharacterized protein
S_scaffold_20_22
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(30695..32467)
DNA (1773bp) protein (591aa)
aif2; translation initiation factor eaIF-5B
Probable translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source
Probable translation initiation factor IF-2
S_scaffold_20_23
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(32460..32921)
DNA (462bp) protein (154aa)
nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.
Nucleoside diphosphate kinase
S_scaffold_20_24
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(32928..33122)
DNA (195bp) protein (65aa)
ribosomal protein L24E
50S ribosomal protein L24e {ECO:0000256|HAMAP-Rule:MF_00773}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregu
50S ribosomal protein L24e
S_scaffold_20_25
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(33128..33340)
DNA (213bp) protein (71aa)
rps28e; 30S ribosomal protein S28e
30S ribosomal protein S28e
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_20_26
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(33350..33715)
DNA (366bp) protein (122aa)
rpl7ae; 50S ribosomal protein L7Ae
50S ribosomal protein L7Ae {ECO:0000256|HAMAP-Rule:MF_00326}; Ribosomal protein L8e {ECO:0000256|HAMAP-Rule:MF_00326}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales;
50S ribosomal protein L7Ae
S_scaffold_20_27
Methanosarcina sp. 1.H.A.2.2, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

33893..36754
DNA (2862bp) protein (954aa)
Leucine--tRNA ligase {ECO:0000313|EMBL:KKH49238.1}; EC=6.1.1.4 {ECO:0000313|EMBL:KKH49238.1};; TaxID=1483601 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Me
leuS; leucyl-tRNA synthetase
Leucine--tRNA ligase
S_scaffold_20_28
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(36741..37136)
DNA (396bp) protein (132aa)
Putative 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 {ECO:0000256|HAMAP-Rule:MF_03036}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_03036};; TaxID=1434117 species="Archaea; Euryarchaeota; Methanomicrobia;
deoxynucleoside 5'-monophosphate N-glycosidase
Putative 2'-deoxynucleoside 5'-phosphate N-hydrolase 1
S_scaffold_20_29
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(37136..39445)
DNA (2310bp) protein (770aa)
Peptidase, U32 family large subunit (C1) {ECO:0000313|EMBL:AKB78241.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source=
collagenase-like protease
Collagenase-like protease
S_scaffold_20_30
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39445..40617)
DNA (1173bp) protein (391aa)
peptidase M24
Peptidase M24 {ECO:0000313|EMBL:ABG05774.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xyla
Peptidase M24
Displaying items 1-30 of 60 in total

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