ggKbase home page

S_scaffold_29

Alias: S_Methanogen_56_636_3

Search features with annotation key words

Displaying items 31-57 of 57 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_29_31
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

30304..31341
DNA (1038bp) protein (346aa)
Uncharacterized protein {ECO:0000313|EMBL:KKG63536.1}; TaxID=2209 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina maze
hypothetical protein
Uncharacterized protein
S_scaffold_29_32
Thermococcus nautili, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

31403..32665
DNA (1263bp) protein (421aa)
Restriction endonuclease S subunits rbh
Restriction endonuclease S subunits {ECO:0000313|EMBL:AHL22801.1}; TaxID=195522 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus naut
HsdS type I restriction-modification enzyme, S subunit
S_scaffold_29_33
unknown

Not on your lists

32668..33816
DNA (1149bp) protein (383aa)
S_scaffold_29_34
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

33866..34798
DNA (933bp) protein (311aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAB89539.1}; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fulgidus (s
Putative uncharacterized protein
S_scaffold_29_35
Thermococcus barophilus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

34866..37757
DNA (2892bp) protein (964aa)
Type I restriction-modification system restriction subunit R {ECO:0000313|EMBL:ADT84564.1}; TaxID=391623 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;"
Type I restriction-modification system restriction subunit R rbh
Type I restriction-modification system restriction subunit R
S_scaffold_29_36
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

37757..38395
DNA (639bp) protein (213aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAB89540.1}; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fulgidus (s
Putative uncharacterized protein
S_scaffold_29_37
unknown

Not on your lists

38400..38564
DNA (165bp) protein (55aa)
S_scaffold_29_38
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(39131..40318)
DNA (1188bp) protein (396aa)
UPF0272 protein ANME2D_02852 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoper
hypothetical protein
UPF0272 Mhar_1278
S_scaffold_29_39
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

40378..41034
DNA (657bp) protein (219aa)
hypothetical protein
Uncharacterized protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_29_40
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

41038..41901
DNA (864bp) protein (288aa)
RIO-like serine/threonine protein kinase fused to N-terminal HTH domain {ECO:0000313|EMBL:KCZ73154.1}; EC=2.7.11.1 {ECO:0000313|EMBL:KCZ73154.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methan
RIO-like kinase
RIO-like kinase
S_scaffold_29_41
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(41889..42476)
DNA (588bp) protein (196aa)
M50 family metallopeptidase Tax=RBG_16_Euryarchaeota_41_19_curated
M50 family metallopeptidase
Putative metalloprotease (M50 family)
S_scaffold_29_42
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(42515..43165)
DNA (651bp) protein (217aa)
metal-binding protein
Putative metal-binding protein {ECO:0000313|EMBL:AFD00054.1}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella co
Putative metal-binding protein
S_scaffold_29_43
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

43426..44697
DNA (1272bp) protein (424aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.
Adenylosuccinate synthetase
Adenylosuccinate synthetase 2
S_scaffold_29_44
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

44703..45722
DNA (1020bp) protein (340aa)
Pyruvate-formate lyase-activating enzyme {ECO:0000313|EMBL:KCZ73678.1}; EC=1.97.1.4 {ECO:0000313|EMBL:KCZ73678.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; C
radical SAM protein
Radical SAM domain protein
S_scaffold_29_45
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

45719..46162
DNA (444bp) protein (148aa)
FAD synthase {ECO:0000256|HAMAP-Rule:MF_02115, ECO:0000256|SAAS:SAAS00008287}; EC=2.7.7.2 {ECO:0000256|HAMAP-Rule:MF_02115, ECO:0000256|SAAS:SAAS00008290};; FMN adenylyltransferase {ECO:0000256|HAMAP-
cytidyltransferase-related domain-containing protein
FAD synthase
S_scaffold_29_46
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

46155..47534
DNA (1380bp) protein (460aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ADE36923.1}; TaxID=547558 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanoh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
S_scaffold_29_47
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

47531..47872
DNA (342bp) protein (114aa)
ArsR family transcriptional regulator
Putative transcription regulator (ArsR family) {ECO:0000313|EMBL:CAJ36886.1}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="
Putative transcription regulator (ArsR family)
S_scaffold_29_48

Not on your lists

48022..48849
DNA (828bp) protein (276aa)
Permease {ECO:0000313|EMBL:AAU84215.1}; TaxID=285403 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos3D4.;"
Protein of unknown function DUF81
Permease
S_scaffold_29_49
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

48940..49239
DNA (300bp) protein (100aa)
transcriptional regulator, PadR family
Transcriptional regulator, PadR family {ECO:0000313|EMBL:AGK60834.1}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglo
Transcriptional regulator, PadR family
S_scaffold_29_50
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

49236..49877
DNA (642bp) protein (214aa)
phosphate ABC transporter ATP-binding protein, PhoT family
Phosphate ABC transporter ATP-binding protein, PhoT family {ECO:0000313|EMBL:AGK60833.1}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;
Phosphate ABC transporter ATP-binding protein, PhoT family
S_scaffold_29_51
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

49890..50651
DNA (762bp) protein (254aa)
TIGR00245 family protein
TIGR00245 family protein {ECO:0000313|EMBL:AGK60832.1}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus sulfatical
TIGR00245 family protein
S_scaffold_29_52
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(50748..52076)
DNA (1329bp) protein (443aa)
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_29_53
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

52326..53420
DNA (1095bp) protein (365aa)
GTP-binding protein
GTP-binding protein RBG1/RBG2 {ECO:0000313|EMBL:AKB66799.1}; TaxID=1434114 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosar
GTP-binding protein
S_scaffold_29_54
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

53458..54303
DNA (846bp) protein (282aa)
Shikimate kinase {ECO:0000313|EMBL:KKH95974.1}; EC=2.7.1.71 {ECO:0000313|EMBL:KKH95974.1};; TaxID=1483602 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Metha
aroL; shikimate kinase (EC:2.7.1.71)
Shikimate kinase
S_scaffold_29_55
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

54306..54593
DNA (288bp) protein (96aa)
chorismate mutase
Chorismate mutase {ECO:0000313|EMBL:AFV24966.1}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrophil
Chorismate mutase
S_scaffold_29_56
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(54568..54966)
DNA (399bp) protein (133aa)
purE; phosphoribosylaminoimidazole carboxylase catalytic subunit PurE (EC:5.4.99.18)
Phosphoribosylaminoimidazole carboxylase, PurE protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_29_57
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(54969..56108)
DNA (1140bp) protein (380aa)
yibO; phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase Tax=S_Thermoanaerobacterales_50_218
2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1
Displaying items 31-57 of 57 in total

View Taxonomy