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S_scaffold_33

Alias: S_Methanogen_56_636_5

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Displaying items 1-30 of 69 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_33_1
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(3..461)
DNA (459bp) protein (153aa)
50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Methanosalsum
50S ribosomal protein L5
S_scaffold_33_2
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(461..1183)
DNA (723bp) protein (241aa)
30S ribosomal protein S4e
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanother
30S ribosomal protein S4e
S_scaffold_33_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(1180..1530)
DNA (351bp) protein (117aa)
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanopered
LSU ribosomal protein L24P
50S ribosomal protein L24P
S_scaffold_33_4
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(1540..1938)
DNA (399bp) protein (133aa)
50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta h
50S ribosomal protein L14P
S_scaffold_33_5
Aciduliprofundum sp. MAR08-339, Aciduliprofundum, Euryarchaeota, Archaea

Not on your lists


comp(1938..2267)
DNA (330bp) protein (110aa)
archaeal ribosomal protein S17P
Archaeal ribosomal protein S17P {ECO:0000313|EMBL:AGB04976.1}; TaxID=673860 species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum sp. (strain MAR08-339).;"
30S ribosomal protein S17P
S_scaffold_33_6
Methanocaldococcus sp. JH146, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(2264..2536)
DNA (273bp) protein (91aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
Ribonuclease P
Ribonuclease P protein component 1
S_scaffold_33_7
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(2533..2736)
DNA (204bp) protein (68aa)
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29P {ECO:0000255|HAMAP-Rule:MF_00374}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosar
50S ribosomal protein L29P
S_scaffold_33_8
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(2736..3626)
DNA (891bp) protein (297aa)
ribosomal protein S3, eukaryotic/archaeal type
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus
30S ribosomal protein S3
S_scaffold_33_9
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(3629..4081)
DNA (453bp) protein (151aa)
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004007}; TaxID=2226 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanoc
50S ribosomal protein L22
50S ribosomal protein L22P
S_scaffold_33_10
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(4091..4537)
DNA (447bp) protein (149aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=523844 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosar
rps19p; 30S ribosomal protein S19
30S ribosomal protein S19
S_scaffold_33_11
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(4549..5262)
DNA (714bp) protein (238aa)
LSU ribosomal protein L2P
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methan
50S ribosomal protein L2
S_scaffold_33_12
Methanosarcina vacuolata, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(5272..5520)
DNA (249bp) protein (83aa)
LSU ribosomal protein L23Ae (L23p)
50S ribosomal protein L23P {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1434123 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosa
50S ribosomal protein L23P
S_scaffold_33_13
Methanosarcina lacustris, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(5514..6269)
DNA (756bp) protein (252aa)
LSU ribosomal protein L1e (L4p)
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1434111 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarc
50S ribosomal protein L4
S_scaffold_33_14
Geoglobus acetivorans, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists


comp(6273..7268)
DNA (996bp) protein (332aa)
LSU ribosomal protein L3e (L3p)
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00023038}; TaxID=565033 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Geoglobus.;" s
50S ribosomal protein L3
S_scaffold_33_15
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7303..8154)
DNA (852bp) protein (284aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK15495.1}; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta thermoph
Putative uncharacterized protein
S_scaffold_33_16
Geoglobus acetivorans, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

9064..9501
DNA (438bp) protein (146aa)
Phage integrase
Phage integrase {ECO:0000313|EMBL:AIY90067.1}; TaxID=565033 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Geoglobus.;" source="Geoglobus acetivorans.;"
Integrase family protein
S_scaffold_33_17
Geoglobus ahangari, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

9833..10309
DNA (477bp) protein (159aa)
Uncharacterized protein conserved in archaea {ECO:0000313|EMBL:AKG91656.1}; TaxID=113653 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Geoglobus.;" source="Geoglobu
hypothetical protein
Uncharacterized protein conserved in archaea
S_scaffold_33_18
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

10306..10611
DNA (306bp) protein (102aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK61401.1}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus sulfaticall
Uncharacterized protein
S_scaffold_33_19
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

10596..10832
DNA (237bp) protein (79aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK61400.1}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus sulfaticall
Uncharacterized protein
S_scaffold_33_20
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(11121..11870)
DNA (750bp) protein (250aa)
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component {ECO:0000313|EMBL:AIG97248.1}; EC=3.6.3.34 {ECO:0000313|EMBL:AIG97248.1};; TaxID=1344584 species="Archaea; Euryarchaeota; Archae
hemV-1; iron ABC transporter ATP-binding protein
Iron (III) ABC transporter, ATP-binding protein (HemV-1)
S_scaffold_33_21
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(11863..12903)
DNA (1041bp) protein (347aa)
hemU-1; iron ABC transporter permease
Iron (III) ABC transporter, permease protein (HemU-1) {ECO:0000313|EMBL:AAB90806.1}; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" sou
Iron (III) ABC transporter, permease protein (HemU-1)
S_scaffold_33_22
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(12887..13993)
DNA (1107bp) protein (369aa)
hemV-2; iron ABC transporter ATP-binding protein
Iron (III) ABC transporter, ATP-binding protein (HemV-2) {ECO:0000313|EMBL:AAB90805.1}; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;"
Iron (III) ABC transporter, ATP-binding protein (HemV-2)
S_scaffold_33_23
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(13990..14427)
DNA (438bp) protein (146aa)
putative methyltransferase, YaeB family (EC:1.2.99.5)
Putative methyltransferase, YaeB family {ECO:0000313|EMBL:AIG97251.1}; EC=1.2.99.5 {ECO:0000313|EMBL:AIG97251.1};; TaxID=1344584 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeo
Probable S-adenosyl-L-methionine-binding protein AF_0433
S_scaffold_33_24
Coprothermobacter proteolyticus, Coprothermobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14417..14728)
DNA (312bp) protein (104aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=309798 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Therm
hypothetical protein
Conserved protein
S_scaffold_33_25
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14739..15092)
DNA (354bp) protein (118aa)
Uncharacterized protein {ECO:0000313|EMBL:AKB77038.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina h
hypothetical protein
Uncharacterized protein
S_scaffold_33_26
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15105..15839)
DNA (735bp) protein (245aa)
cooC; carbon monoxide dehydrogenase accessory protein
Carbon monoxide dehydrogenase accessory protein {ECO:0000313|EMBL:AEB67330.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" sourc
Carbon monoxide dehydrogenase accessory protein
S_scaffold_33_27
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15817..16446)
DNA (630bp) protein (210aa)
flavin reductase domain-containing FMN-binding protein
Flavin reductase domain protein FMN-binding {ECO:0000313|EMBL:ACV61313.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotom
Flavin reductase domain protein FMN-binding
S_scaffold_33_28
unknown

Not on your lists

comp(16449..16652)
DNA (204bp) protein (68aa)
S_scaffold_33_29
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(16676..16933)
DNA (258bp) protein (86aa)
putative transcriptional regulator
Transcriptional regulatory protein, ArsR family {ECO:0000313|EMBL:AAB89703.1}; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="A
Transcriptional regulatory protein, ArsR family
S_scaffold_33_30
unknown

Not on your lists

comp(17000..17221)
DNA (222bp) protein (74aa)
Displaying items 1-30 of 69 in total

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