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S_scaffold_55

Alias: S_Methanogen_56_636_9

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Displaying items 31-51 of 51 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_55_31
Thermoplasma volcanium, Thermoplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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25675..27582
DNA (1908bp) protein (636aa)
V-type ATP synthase subunit I (EC:3.6.3.14)
V-type ATP synthase subunit I {ECO:0000256|RuleBase:RU361189}; TaxID=273116 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Thermoplasmataceae; Thermoplasma.;" source="Thermoplasma
H+-transporting ATP synthase subunit I
S_scaffold_55_32

Not on your lists

27597..27833
DNA (237bp) protein (79aa)
H+ ATPase subunit K (EC:3.6.3.15)
ATPase {ECO:0000313|EMBL:AKA48272.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
H+transporting two-sector ATPase C subunit
S_scaffold_55_33
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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27855..28442
DNA (588bp) protein (196aa)
atpE; V-type ATP synthase subunit E (EC:3.6.3.14)
V-type ATP synthase subunit E; V-ATPase subunit E {ECO:0000255|HAMAP-Rule:MF_00311}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" sour
V-type ATP synthase subunit E
S_scaffold_55_34

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28439..29521
DNA (1083bp) protein (361aa)
A-type ATP synthase subunit C, V-type H+-transporting ATPase subunit C (EC:3.6.3.14)
atpC-1; A-type ATP synthase subunit C; K02119 V-type H+-transporting ATPase subunit C [EC:3.6.3.14] alias=gwa2_scaffold_1009_64 id=5045099 tax=GW2011_AR10 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_desc=gwa2_.44_58 (temp)
V-type ATP synthase subunit C {ECO:0000256|HAMAP-Rule:MF_00314}; V-ATPase subunit C {ECO:0000256|HAMAP-Rule:MF_00314}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
S_scaffold_55_35

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29526..29852
DNA (327bp) protein (109aa)
A-type ATP synthase subunit F, V-type H+-transporting ATPase subunit F (EC:3.6.3.14)
V-type ATP synthase subunit F {ECO:0000256|HAMAP-Rule:MF_00312}; V-ATPase subunit F {ECO:0000256|HAMAP-Rule:MF_00312}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
V-type ATP synthase subunit F alias=gwa2_scaffold_1009_63 id=5045098 tax=GW2011_AR10 species=Methanocella conradii genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_desc=gwa2_.44_58 (temp)
S_scaffold_55_36
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

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29865..31613
DNA (1749bp) protein (583aa)
NtpA; V-type ATP synthase subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain {ECO:0000255|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000255|HAMAP-Rule:MF_00309}; TaxID=190192 species="Archaea;
V-type ATP synthase alpha chain
S_scaffold_55_37

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31620..33020
DNA (1401bp) protein (467aa)
V-type H+-transporting ATPase subunit B (EC:3.6.3.14)
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
V-type ATP synthase beta chain alias=gwa2_scaffold_1009_61 id=5045096 tax=GW2011_AR10 species=Pyrococcus horikoshii genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota organism_desc=gwa2_.44_58 (temp)
S_scaffold_55_38
Methanocaldococcus villosus, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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33027..33680
DNA (654bp) protein (218aa)
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=1069083 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Met
V-type ATP synthase subunit D
V-type ATP synthase subunit D
S_scaffold_55_39
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(33935..34903)
DNA (969bp) protein (323aa)
Probable tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01081}; Short=Psi5
H/ACA RNA-protein complex component Cbf5p
Probable tRNA pseudouridine synthase B
S_scaffold_55_40

Not on your lists

comp(34906..35436)
DNA (531bp) protein (177aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00239, ECO:0000256|SAAS:SAAS00054797}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00239};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00239, ECO:0000256|SAAS:SAAS0005
cytidylate kinase
Cytidylate kinase
S_scaffold_55_41
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(35437..36063)
DNA (627bp) protein (209aa)
hypothetical protein
Uncharacterized protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_55_42
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(36065..36715)
DNA (651bp) protein (217aa)
adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
Adenylate kinase
S_scaffold_55_43
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(36712..38187)
DNA (1476bp) protein (492aa)
preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; Protein transport protein SEC61 subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=123690
Protein translocase subunit SecY
S_scaffold_55_44
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(38203..38637)
DNA (435bp) protein (145aa)
rpl15p; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000313|EMBL:KKH17627.1}; TaxID=2209 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina ma
50S ribosomal protein L15P
S_scaffold_55_45
Methanospirillum hungatei, Methanospirillum, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(38643..39104)
DNA (462bp) protein (154aa)
rpl30p; 50S ribosomal protein L30
50S ribosomal protein L30P {ECO:0000255|HAMAP-Rule:MF_01371}; TaxID=323259 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanospirillaceae; Methanospirillum.;" source="Methan
50S ribosomal protein L30P
S_scaffold_55_46
Methanosarcina sp. 2.H.T.1A.3, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(39104..39793)
DNA (690bp) protein (230aa)
30S ribosomal protein S5 {ECO:0000313|EMBL:KKG17501.1}; TaxID=1483597 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina
ribosomal protein S5/S2
30S ribosomal protein S5
S_scaffold_55_47
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(39790..40317)
DNA (528bp) protein (176aa)
rpl18p; 50S ribosomal protein L18P
50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta th
50S ribosomal protein L18P
S_scaffold_55_48
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(40319..40774)
DNA (456bp) protein (152aa)
rpl19e; 50S ribosomal protein L19e
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arv
50S ribosomal protein L19e
S_scaffold_55_49
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(40767..41186)
DNA (420bp) protein (140aa)
rpmF; 50S ribosomal protein L32
Ribosomal protein L32 {ECO:0000313|EMBL:AEB69091.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (
Ribosomal protein L32
S_scaffold_55_50
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(41188..41721)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus
50S ribosomal protein L6
50S ribosomal protein L6
S_scaffold_55_51
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(41732..42031)
DNA (300bp) protein (100aa)
rps8p; 30S ribosomal protein S8P
30S ribosomal protein S8
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
Displaying items 31-51 of 51 in total

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