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S_scaffold_55

Alias: S_Methanogen_56_636_9

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Displaying items 1-30 of 51 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_55_1
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2..853
DNA (852bp) protein (284aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI74818.1}; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanohalobium
Uncharacterized protein
S_scaffold_55_2
unknown

Not on your lists

846..1322
DNA (477bp) protein (159aa)
S_scaffold_55_3
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1595..2038
DNA (444bp) protein (148aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE37099.1}; TaxID=547558 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalophilus.;" source="Methanohalophi
Putative uncharacterized protein
S_scaffold_55_4
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2028..2558
DNA (531bp) protein (177aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB49662.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanometh
Uncharacterized protein
S_scaffold_55_5
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2539..3192)
DNA (654bp) protein (218aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052};; TaxID=1094980 species="Archaea; Euryarchaeota; M
rnhB; ribonuclease HII
Ribonuclease HII
S_scaffold_55_6
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3194..3994)
DNA (801bp) protein (267aa)
ABC-3 protein; K09816 zinc transport system permease protein Tax=CG_Delta_01
ABC-3 protein
ABC-3 protein
S_scaffold_55_7
RBG_13_Chloroflexi_53_26_curated, Chloroflexi, Bacteria

Not on your lists

comp(3987..4778)
DNA (792bp) protein (264aa)
ABC transporter; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-] Tax=RBG_13_Chloroflexi_53_26_curated
Cation ABC transporter, ATP-binding protein
Cation ABC transporter, ATP-binding protein
S_scaffold_55_8
RBG_13_Chloroflexi_53_26_curated, Chloroflexi, Bacteria

Not on your lists

comp(4801..5715)
DNA (915bp) protein (305aa)
periplasmic solute binding protein; K09815 zinc transport system substrate-binding protein Tax=RBG_13_Chloroflexi_53_26_curated
periplasmic solute binding protein
Periplasmic solute binding protein
S_scaffold_55_9

Not on your lists

5832..6218
DNA (387bp) protein (129aa)
Putative nickel responsive regulator 1 {ECO:0000313|EMBL:CBH38270.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
CopG family transcriptional regulator
Putative nickel responsive regulator 1
S_scaffold_55_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6222..6590
DNA (369bp) protein (123aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_0012
aspartyl/glutamyl-tRNA amidotransferase subunit C
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
S_scaffold_55_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6600..7994
DNA (1395bp) protein (465aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=139299
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A
Glutamyl-tRNA(Gln) amidotransferase subunit A
S_scaffold_55_12
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7994..9418
DNA (1425bp) protein (475aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_0012
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
S_scaffold_55_13
Methanosarcina sp. WWM596, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9469..10035)
DNA (567bp) protein (189aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB18780.1}; TaxID=1434103 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina s
Uncharacterized protein
S_scaffold_55_14
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(10174..10926)
DNA (753bp) protein (251aa)
phosphate ABC transporter, ATP-binding protein (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-tran
Phosphate ABC transporter ATP-binding protein, PhoT family
S_scaffold_55_15
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(10923..11762)
DNA (840bp) protein (280aa)
phosphate ABC transporter, permease protein PstA
Phosphate ABC transporter, permease protein PstA {ECO:0000313|EMBL:AIG98236.1}; TaxID=1344584 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source=
Phosphate ABC transporter, inner membrane subunit PstA
S_scaffold_55_16
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(11743..12657)
DNA (915bp) protein (305aa)
phosphate ABC transporter permease rbh
Phosphate ABC transporter, inner membrane subunit PstC {ECO:0000313|EMBL:ADB57170.1}; Flags: Precursor;; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae;
Phosphate ABC transporter, inner membrane subunit PstC
S_scaffold_55_17
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(12670..13767)
DNA (1098bp) protein (366aa)
phosphate ABC transporter, phosphate-binding protein
Phosphate-binding protein {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1344584 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fulgid
Phosphate ABC transporter substrate-binding protein, PhoT family
S_scaffold_55_18
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13869..14891
DNA (1023bp) protein (341aa)
hypothetical protein
Putative uncharacterized protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_55_19
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

15003..15653
DNA (651bp) protein (217aa)
phosphate uptake regulator PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Famil
Phosphate-specific transport system accessory protein PhoU
S_scaffold_55_20
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15985..16689
DNA (705bp) protein (235aa)
Archaeal heat shock regulator, ArsR family {ECO:0000313|EMBL:AKB15978.1}; TaxID=1434121 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" sourc
ArsR family transcriptional regulator
Putative transcriptional regulator, ArsR family
S_scaffold_55_21
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16915..17223
DNA (309bp) protein (103aa)
Protein translation factor SUI1 homolog {ECO:0000256|HAMAP-Rule:MF_00604, ECO:0000256|PIRNR:PIRNR037511}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarc
translation initiation factor SUI1
Protein translation factor SUI1 homolog
S_scaffold_55_22
unknown

Not on your lists

comp(17293..17814)
DNA (522bp) protein (174aa)
S_scaffold_55_23
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17830..18018)
DNA (189bp) protein (63aa)
hypothetical protein
UPF0145 protein Mtc_1209 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella conr
UPF0145 protein Mtc_1209
S_scaffold_55_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


18082..19548
DNA (1467bp) protein (489aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00282}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00282};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00282}
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit
S_scaffold_55_25
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


19553..21187
DNA (1635bp) protein (545aa)
phenylalanyl-tRNA synthetase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000255|HAMAP-Rule:MF_00284}; EC=6.1.1.20 {ECO:0000255|HAMAP-Rule:MF_00284};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000255|HAMAP-Rule:MF_00284};
Phenylalanine--tRNA ligase beta subunit
S_scaffold_55_26
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

21150..22220
DNA (1071bp) protein (357aa)
radical SAM protein Tax=RBG_16_Euryarchaeota_41_19_curated
radical SAM protein
Radical SAM domain protein
S_scaffold_55_27
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22221..23396)
DNA (1176bp) protein (392aa)
Digeranylgeranylglycerophospholipid reductase {ECO:0000256|HAMAP-Rule:MF_01287}; Short=DGGGPL reductase {ECO:0000256|HAMAP-Rule:MF_01287};; EC=1.3.99.34 {ECO:0000256|HAMAP-Rule:MF_01287};; 2,3-bis-O-g
geranylgeranyl reductase
Digeranylgeranylglycerophospholipid reductase
S_scaffold_55_28
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(23664..23966)
DNA (303bp) protein (101aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE36513.1}; TaxID=547558 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalophilus.;" source="Methanohalophi
Putative uncharacterized protein
S_scaffold_55_29
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

24169..25227
DNA (1059bp) protein (353aa)
cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] Tax=RIFCSPLOWO2_
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide-dimethylbenzimidazolephosph oribosyltransferase
S_scaffold_55_30
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

25344..25664
DNA (321bp) protein (107aa)
ATP synthase archaeal, H subunit {ECO:0000313|EMBL:AGK62152.1}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus su
ATP synthase archaeal, H subunit
Displaying items 1-30 of 51 in total

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