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S_scaffold_88

Alias: S_Methanogen_56_636_15

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Displaying items 1-30 of 33 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_88_1

Not on your lists

comp(121..756)
DNA (636bp) protein (212aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK63059.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative glutaredoxin-like protein
Glutaredoxin-related protein
S_scaffold_88_2
Methanoculleus bourgensis, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(790..1368)
DNA (579bp) protein (193aa)
tRNA threonylcarbamoyl adenosine modification protein
tRNA threonylcarbamoyl adenosine modification protein {ECO:0000313|EMBL:CCJ35317.1}; TaxID=1201294 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanocul
Uncharacterized protein
S_scaffold_88_3
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1458..2033
DNA (576bp) protein (192aa)
FmdE, Molybdenum formylmethanofuran dehydrogenase operon {ECO:0000313|EMBL:AKB26978.1}; TaxID=1434120 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosa
FmdE, Molybdenum formylmethanofuran dehydrogenase operon
Molybdenum-containing formylmethanofuran dehydrogenase isoenzyme I subunit E
S_scaffold_88_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2030..3082
DNA (1053bp) protein (351aa)
Molybdenum formylmethanofuran dehydrogenase, subunit F; K00205 formylmethanofuran dehydrogenase subunit F [EC:1.2.99.5] Tax=RBG_16_Euryarchaeota_41_19_curated
NADH:ubiquinone oxidoreductase chain I-like protein
NADH:ubiquinone oxidoreductase chain I-like protein
S_scaffold_88_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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3082..4836
DNA (1755bp) protein (585aa)
formylmethanofuran dehydrogenase subunit A Tax=RBG_16_Euryarchaeota_41_19_curated
formylmethanofuran dehydrogenase subunit A
Formylmethanofuran dehydrogenase subunit A
S_scaffold_88_6
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4823..5650
DNA (828bp) protein (276aa)
formylmethanofuran dehydrogenase subunit C
Formylmethanofuran dehydrogenase subunit C {ECO:0000313|EMBL:AGB48980.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;"
Formylmethanofuran dehydrogenase subunit C
S_scaffold_88_7
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5661..6050
DNA (390bp) protein (130aa)
fmdD; formylmethanofuran dehydrogenase, subunit D
Formylmethanofuran dehydrogenase, subunit D {ECO:0000313|EMBL:AAM07525.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" sourc
Formylmethanofuran dehydrogenase, subunit D
S_scaffold_88_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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6052..7353
DNA (1302bp) protein (434aa)
fmdB; formylmethanofuran dehydrogenase subunit B (EC:1.2.99.5); K00201 formylmethanofuran dehydrogenase subunit B [EC:1.2.99.5] Tax=RBG_16_Euryarchaeota_41_19_curated
Formylmethanofuran dehydrogenase (molybdenum) subunit B (EC:1.2.99.5)
Molybdenum formylmethanofuran dehydrogenase subunit
S_scaffold_88_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

7357..8184
DNA (828bp) protein (276aa)
Formate dehydrogenase family accessory protein FdhD; K02379 FdhD protein Tax=RBG_16_Euryarchaeota_41_19_curated
formate dehydrogenase family accessory protein FdhD
Formate dehydrogenase family accessory protein FdhD
S_scaffold_88_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8215..8898
DNA (684bp) protein (228aa)
Metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KCZ70666.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcina
hypothetical protein
Uncharacterized protein
S_scaffold_88_11
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8900..9709
DNA (810bp) protein (270aa)
prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase {ECO:0000313|EMBL:ABK14725.1}; EC=4.2.1.51 {ECO:0000313|EMBL:ABK14725.1};; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Me
Prephenate dehydratase
S_scaffold_88_12
Methanocaldococcus vulcanius, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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9721..10494
DNA (774bp) protein (258aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX71934.1}; TaxID=579137 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococ
Putative uncharacterized protein
S_scaffold_88_13
Geoglobus acetivorans, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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10624..10914
DNA (291bp) protein (97aa)
Nucleotidyltransferase
Nucleotidyltransferase {ECO:0000313|EMBL:AIY90291.1}; TaxID=565033 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Geoglobus.;" source="Geoglobus acetivorans.;"
Putative nucleotidyltransferase
S_scaffold_88_14
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11316..11906
DNA (591bp) protein (197aa)
50S ribosomal protein L15e {ECO:0000256|HAMAP-Rule:MF_00256}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methano
50S ribosomal protein L15e
50S ribosomal protein L15e
S_scaffold_88_15
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11907..12338
DNA (432bp) protein (144aa)
Exosome subunit {ECO:0000313|EMBL:KGK98795.1}; TaxID=2226 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylut
hypothetical protein
Uncharacterized protein
S_scaffold_88_16
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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12331..13014
DNA (684bp) protein (228aa)
Ribonuclease P protein component 3 {ECO:0000256|HAMAP-Rule:MF_00756}; Short=RNase P component 3 {ECO:0000256|HAMAP-Rule:MF_00756};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00756};; Rpp30 {ECO:0000256|H
ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component 3
S_scaffold_88_17
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13015..13707)
DNA (693bp) protein (231aa)
rpi; ribose-5-phosphate isomerase A (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000313|EMBL:CAJ37021.1};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170};
Ribose-5-phosphate isomerase A
S_scaffold_88_18
Methanospirillum hungatei, Methanospirillum, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13704..14078)
DNA (375bp) protein (125aa)
phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000255|HAMAP-Rule:MF_01021}; Short=PRA-CH {ECO:0000255|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000255|HAMAP-Rule:MF_01021};; TaxID=323259 species="Archaea; Eur
Phosphoribosyl-AMP cyclohydrolase
S_scaffold_88_19
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14068..15141)
DNA (1074bp) protein (358aa)
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ADE36982.1}; TaxID=547558 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalophilus.;" source="Methanohalophilus mahii
Amidohydrolase
S_scaffold_88_20
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15150..15521)
DNA (372bp) protein (124aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI61488.1}; TaxID=304371 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella paludicola
Uncharacterized protein
S_scaffold_88_21
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15521..15748)
DNA (228bp) protein (76aa)
Putative snRNP Sm-like protein, Archaeal
Small nuclear ribonucleoprotein, LSM family {ECO:0000313|EMBL:AAZ72465.1}; TaxID=269797 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" sourc
Small nuclear ribonucleoprotein, LSM family
S_scaffold_88_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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16412..17188
DNA (777bp) protein (259aa)
Membrane protease subunit, stomatin/prohibitin {ECO:0000313|EMBL:KCZ73197.1}; Flags: Precursor;; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanope
band 7 protein
SPFH domain, Band 7 family protein
S_scaffold_88_23
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17185..18513
DNA (1329bp) protein (443aa)
nodulation efficiency protein NfeD
Protein with NfeD-like domain {ECO:0000313|EMBL:ABE52689.1}; Flags: Precursor;; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;
Protein with NfeD-like domain
S_scaffold_88_24
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18732..19853)
DNA (1122bp) protein (374aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM07221.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina ac
Uncharacterized protein
S_scaffold_88_25
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19843..20715)
DNA (873bp) protein (291aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ35579.1}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae
Uncharacterized protein
S_scaffold_88_26
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

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21417..22742
DNA (1326bp) protein (442aa)
amino acid transporter Tax=RBG_13_Actinobacteria_55_18_curated
amino acid transporter
Putative amino acid transporter
S_scaffold_88_27

Not on your lists

comp(22745..24259)
DNA (1515bp) protein (505aa)
MoaA/nifB/pqqE family protein {ECO:0000313|EMBL:AAU82760.1}; TaxID=285361 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos19C8.;"
radical SAM domain-containing protein
MoaA/nifB/pqqE family protein
S_scaffold_88_28
Candidatus Methanomassiliicoccus intestinalis, Methanomassiliicoccus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

24375..24932
DNA (558bp) protein (186aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGN26007.1}; TaxID=1295009 species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus.;" source
Putative uncharacterized protein
S_scaffold_88_29
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

24979..26109
DNA (1131bp) protein (377aa)
putative Fe-S oxidoreductase
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:AGB50378.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methan
Putative Fe-S oxidoreductase
S_scaffold_88_30
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(26110..27717)
DNA (1608bp) protein (536aa)
O-phosphoserine--tRNA(Cys) ligase {ECO:0000256|HAMAP-Rule:MF_01674}; Short=O-phosphoserine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01674};; EC=6.1.1.27 {ECO:0000256|HAMAP-Rule:MF_01674};; Non-canonica
O-phosphoseryl-tRNA(Cys) synthetase
O-phosphoserine--tRNA(Cys) ligase
Displaying items 1-30 of 33 in total

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