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S_scaffold_89

Alias: S_Methanogen_56_636_16

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_89_1
Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1), Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1..129)
DNA (129bp) protein (43aa)
Protein with phosphotransacetylase BioD-like N-terminal domain
S_scaffold_89_2
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(134..2221)
DNA (2088bp) protein (696aa)
acetyl coenzyme A synthetase
Acetyl coenzyme A synthetase (ADP forming), alpha domain protein {ECO:0000313|EMBL:ADI74752.1}; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Me
Acetyl coenzyme A synthetase (ADP forming), alpha domain protein
S_scaffold_89_3
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2221..2610)
DNA (390bp) protein (130aa)
Conserved protein associated with acetyl-CoA C-acyltransferase {ECO:0000313|EMBL:AKB23950.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Met
hypothetical protein
Uncharacterized protein
S_scaffold_89_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(2615..3778)
DNA (1164bp) protein (388aa)
Beta-ketoacyl synthase/thiolase Tax=RBG_16_Euryarchaeota_41_19_curated
acetyl-CoA acetyltransferase
Acetyl-CoA acetyltransferase
S_scaffold_89_5
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3783..4835)
DNA (1053bp) protein (351aa)
UPF0219 protein MCMEM_0156 {ECO:0000256|HAMAP-Rule:MF_01409}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methano
hypothetical protein
UPF0219 protein Mpsy_1638
S_scaffold_89_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(4832..5566)
DNA (735bp) protein (245aa)
hypothetical protein Tax=RBG_16_Euryarchaeota_41_19_curated
XRE family transcriptional regulator
HTH DNA-binding domain protein
S_scaffold_89_7
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5872..6138
DNA (267bp) protein (89aa)
Elongation factor 1-beta
Elongation factor 1-beta
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_89_8
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6209..7324
DNA (1116bp) protein (372aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_01244}; Short=DHQ synthase {ECO:0000256|HAMAP-Rule:MF_01244};; EC=1.4.1.24 {ECO:0000256|HAMAP-Rule:MF_01244};; 3-dehydroquinate synthase II {ECO:00
3-dehydroquinate synthase
3-dehydroquinate synthase
S_scaffold_89_9
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7327..7992
DNA (666bp) protein (222aa)
Methanogen homoaconitase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; Short=HACN {ECO:0000256|HAMAP-Rule:MF_01032};; EC=4.2.1.114 {ECO:0000256|HAMAP-Rule:MF_01032};; Homoaconitate hydratase {ECO:0
3-isopropylmalate dehydratase small subunit
3-isopropylmalate dehydratase small subunit
S_scaffold_89_10
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7934..8797
DNA (864bp) protein (288aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI74173.1}; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanohalobium
Uncharacterized protein
S_scaffold_89_11
Methanosarcina sp. 2.H.T.1A.8, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8799..10310
DNA (1512bp) protein (504aa)
archaeosine tRNA-ribosyltransferase type 1 (EC:2.4.2.-)
7-cyano-7-deazaguanine tRNA-ribosyltransferase {ECO:0000313|EMBL:KKG22608.1}; TaxID=1483598 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" s
tRNA-guanine(15) transglycosylase
S_scaffold_89_12
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10303..10626
DNA (324bp) protein (108aa)
hypothetical protein
Uncharacterized protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_89_13
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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10671..12020
DNA (1350bp) protein (450aa)
K+ transport system, NAD-binding component {ECO:0000313|EMBL:ETA67266.1}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source=
trkA; potassium transporter peripheral membrane component
Trk system potassium uptake protein TrkA homolog 1
S_scaffold_89_14
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12031..13491
DNA (1461bp) protein (487aa)
cation transporter
Cation transporter {ECO:0000313|EMBL:AEH61449.1}; Flags: Precursor;; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Meth
Cation transporter
S_scaffold_89_15
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13504..15246
DNA (1743bp) protein (581aa)
ade; adenine deaminase (EC:3.5.4.2); K01486 adenine deaminase [EC:3.5.4.2] Tax=RBG_16_Deltaproteobacteria_49_23_curated
adenine deaminase
Adenine deaminase
S_scaffold_89_16
Methanococcus aeolicus, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

15267..15830
DNA (564bp) protein (188aa)
adenine phosphoribosyltransferase (EC:2.4.2.7)
Hypoxanthine/guanine phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_01467}; Short=HGPRTase {ECO:0000255|HAMAP-Rule:MF_01467};; EC=2.4.2.8 {ECO:0000255|HAMAP-Rule:MF_01467};; TaxID=419665 species
Hypoxanthine/guanine phosphoribosyltransferase
S_scaffold_89_17
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15827..17128
DNA (1302bp) protein (434aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1094980 species="Archaea
tryptophanyl-tRNA synthetase
Tryptophan--tRNA ligase
S_scaffold_89_18
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17146..17523)
DNA (378bp) protein (126aa)
Zn-ribbon containing protein
Zn-ribbon containing protein {ECO:0000313|EMBL:AGB48550.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methan
Zn-ribbon containing protein
S_scaffold_89_19
Methanosarcina vacuolata, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17577..18542)
DNA (966bp) protein (322aa)
Exopolyphosphatase-related protein
Exopolyphosphatase-related protein {ECO:0000313|EMBL:AKB43272.1}; TaxID=1434123 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Metha
Uncharacterized protein
S_scaffold_89_20
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18570..19760)
DNA (1191bp) protein (397aa)
geranylgeranyl reductase
Geranylgeranyl reductase {ECO:0000313|EMBL:ADI74451.1}; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanohalobium
Geranylgeranyl reductase
S_scaffold_89_21
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists


comp(19753..21000)
DNA (1248bp) protein (416aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=572546 species="Archaea; Eur
Histidine--tRNA ligase
S_scaffold_89_22
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21022..21714)
DNA (693bp) protein (231aa)
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; Short=HPPK {ECO:0000256|HAMAP-Rule:MF_02131};; EC=2.7.6.3 {ECO:0000256|HAMAP-Rule:MF_02131};; 2-amino-4-hydroxy-6
hypothetical protein
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
S_scaffold_89_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

21775..22497
DNA (723bp) protein (241aa)
mtaP; methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=RBG_16_Euryarchaeota_68_12_curated
phosphorylase family 2 protein
Putative uncharacterized protein
S_scaffold_89_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

22749..24047
DNA (1299bp) protein (433aa)
DNA primase DnaG {ECO:0000256|HAMAP-Rule:MF_00007, ECO:0000256|SAAS:SAAS00020821}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00007, ECO:0000256|SAAS:SAAS00020820};; TaxID=1392998 species="Archaea; Euryarc
hypothetical protein
UPF0095 protein Mhar_1924
S_scaffold_89_25
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


24469..27069
DNA (2601bp) protein (867aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_89_26
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

27197..28444
DNA (1248bp) protein (416aa)
tRNA pseudouridine synthase Pus10 {ECO:0000256|HAMAP-Rule:MF_01893}; EC=5.4.99.- {ECO:0000256|HAMAP-Rule:MF_01893};; tRNA pseudouridine 54/55 synthase {ECO:0000256|HAMAP-Rule:MF_01893}; TaxID=679901 s
THUMP domain-containing protein
tRNA pseudouridine synthase Pus10
S_scaffold_89_27
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(28494..29675)
DNA (1182bp) protein (394aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=679901 species="Archa
Argininosuccinate synthase
Displaying 27 items

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