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S_scaffold_99

Alias: S_Methanogen_56_636_19

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Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_99_1
unknown

Not on your lists

comp(1..162)
DNA (162bp) protein (54aa)
S_scaffold_99_2
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(318..1151)
DNA (834bp) protein (278aa)
Universal stress protein UspA-related nucleotide-binding protein
Universal stress protein UspA-related nucleotide-binding protein {ECO:0000313|EMBL:AGK60674.1}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeogl
Universal stress protein UspA-related nucleotide-binding protein
S_scaffold_99_3
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(1192..2193)
DNA (1002bp) protein (334aa)
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGK60673.1}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus sulfatica
Putative membrane protein
S_scaffold_99_4
Pyrococcus horikoshii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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2745..3542
DNA (798bp) protein (266aa)
hypothetical protein rbh
Putative uncharacterized protein PH0370 {ECO:0000313|EMBL:BAA29444.1}; TaxID=70601 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus horik
Putative uncharacterized protein PH0370
S_scaffold_99_5
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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3532..4398
DNA (867bp) protein (289aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ36712.1}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae
Uncharacterized protein
S_scaffold_99_6
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(5081..5374)
DNA (294bp) protein (98aa)
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEA48079.1}; TaxID=693661 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus ve
Putative uncharacterized protein
S_scaffold_99_7
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5699..6100)
DNA (402bp) protein (134aa)
hypothetical protein Tax=RBG_13_Deltaproteobacteria_61_14_curated
hypothetical protein
Uncharacterized protein
S_scaffold_99_8
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6097..6444)
DNA (348bp) protein (116aa)
putative nucleotidyltransferase
Putative nucleotidyltransferase {ECO:0000313|EMBL:AET64585.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta
Putative nucleotidyltransferase
S_scaffold_99_9
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7169..7720
DNA (552bp) protein (184aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL15758.1}; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerul
Putative uncharacterized protein
S_scaffold_99_10
BJP_IG2069_Methanobacteriales_33_27, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(7696..8160)
DNA (465bp) protein (155aa)
hypothetical protein
Conserved hypothetical membrane protein DUF1616 family
Tax=BJP_IG2069_Methanobacteriales_33_27
S_scaffold_99_11
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8160..8471)
DNA (312bp) protein (104aa)
DNA-directed RNA polymerase, subunit M (EC:2.7.7.6)
DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586}; EC=2.7.7.6 {ECO:0000256|PIRNR:PIRNR005586};; TaxID=547558 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Meth
DNA-directed RNA polymerase subunit
S_scaffold_99_12
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8561..9835)
DNA (1275bp) protein (425aa)
truD; tRNA pseudouridine synthase D (EC:5.4.99.12)
Probable tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseud
Probable tRNA pseudouridine synthase D
S_scaffold_99_13
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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9874..11067
DNA (1194bp) protein (398aa)
geranylgeranyl reductase family
Geranylgeranyl reductase family {ECO:0000313|EMBL:AFD00392.1}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella c
Geranylgeranyl reductase family
S_scaffold_99_14
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11234..11416)
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB45148.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HG
hypothetical protein
Uncharacterized protein
S_scaffold_99_15
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11509..12222)
DNA (714bp) protein (238aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET63542.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundi
Uncharacterized protein
S_scaffold_99_16

Not on your lists

comp(12485..12679)
DNA (195bp) protein (65aa)
4-oxalocrotonate tautomerase (EC:5.3.2.-)
Uncharacterized protein {ECO:0000313|EMBL:KKN47671.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
4-oxalocrotonate tautomerase
S_scaffold_99_17
Thermotoga sp. KOL6, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

12769..13194
DNA (426bp) protein (142aa)
putative methyltransferase, YaeB family (EC:1.2.99.5)
Putative uncharacterized protein {ECO:0000313|EMBL:CAI44396.1}; TaxID=126741 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga sp. KOL6.;"
Putative uncharacterized protein
S_scaffold_99_18
RLO_RIF05_58_11, RIF5, Bacteria

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13204..14373
DNA (1170bp) protein (390aa)
major facilitator superfamily MFS_1 Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1
S_scaffold_99_19
Pyrobaculum aerophilum, Pyrobaculum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(14832..15158)
DNA (327bp) protein (109aa)
divalent cation tolerance protein
Divalent cation tolerance protein, conjectural {ECO:0000313|EMBL:AAL64111.1}; TaxID=178306 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum.;" source="Pyro
Divalent cation tolerance protein, conjectural
S_scaffold_99_20

Not on your lists

comp(15145..16665)
DNA (1521bp) protein (507aa)
Formate dehydrogenase like protein,alpha chain {ECO:0000313|EMBL:CAI64341.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CAI64341.1};; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured arch
formate dehydrogenase like protein,alpha chain
Formate dehydrogenase like protein,alpha chain
S_scaffold_99_21
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(16666..17805)
DNA (1140bp) protein (380aa)
formate dehydrogenase like protein, beta chain Tax=RBG_16_Euryarchaeota_41_19_curated
formate dehydrogenase like protein, beta chain
Formate dehydrogenase like protein, beta chain
S_scaffold_99_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17802..18227)
DNA (426bp) protein (142aa)
Coenzyme F420-reducing hydrogenase, delta subunit {ECO:0000313|EMBL:KCZ71431.1}; EC=1.12.99.- {ECO:0000313|EMBL:KCZ71431.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosar
mvhD; methyl viologen-reducing hydrogenase delta subunit MvhD
Methyl viologen-reducing hydrogenase, delta chain
S_scaffold_99_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18230..21283)
DNA (3054bp) protein (1018aa)
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KCZ71428.1}; EC=1.8.98.1 {ECO:0000313|EMBL:KCZ71428.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinale
4Fe-4S ferredoxin
Heterodisulfide reductase like protein, subunit A
S_scaffold_99_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21280..22158)
DNA (879bp) protein (293aa)
Heterodisulfide reductase, subunit B {ECO:0000313|EMBL:KCZ71427.1}; EC=1.8.98.1 {ECO:0000313|EMBL:KCZ71427.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candi
CoB--CoM heterodisulfide reductase (EC:1.8.98.1)
CoB--CoM heterodisulfide reductase
S_scaffold_99_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22155..22727)
DNA (573bp) protein (191aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71426.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;"
heterodisulfide reductase, subunit C
Heterodisulfide reductase subunit C
S_scaffold_99_26
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(22912..23466)
DNA (555bp) protein (185aa)
molybdopterin-guanine dinucleotide biosynthesis protein A (EC:2.7.7.77) Tax=CG_Arma_02
molybdenum cofactor guanylyltransferase
Probable molybdenum cofactor guanylyltransferase
S_scaffold_99_27
unknown

Not on your lists

comp(23466..23762)
DNA (297bp) protein (99aa)
S_scaffold_99_28
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

23811..25715
DNA (1905bp) protein (635aa)
Glutamyl-tRNA(Gln) amidotransferase subunit E {ECO:0000256|HAMAP-Rule:MF_00588}; Short=Glu-ADT subunit E {ECO:0000256|HAMAP-Rule:MF_00588};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00588};; TaxID=143410
glutamyl-tRNA(Gln) amidotransferase subunit E
Glutamyl-tRNA(Gln) amidotransferase subunit E
S_scaffold_99_29
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

25712..26674
DNA (963bp) protein (321aa)
GTP-binding protein, gtp1/obg family {ECO:0000313|EMBL:AKB12593.1}; TaxID=523844 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Meth
Nucleolar GTP-binding-1 domain-containing protein
Nucleolar GTP-binding-1 domain protein
S_scaffold_99_30
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(27143..28072)
DNA (930bp) protein (310aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB55380.1}; TaxID=1434108 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina b
Displaying 30 items

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