ggKbase home page

S_scaffold_135

Alias: S_Methanogen_56_636_14

Search features with annotation key words

Displaying items 1-30 of 37 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_135_1
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

2..598
DNA (597bp) protein (199aa)
putative ATPase of the PP-loop superfamily implicated in cell cycle control
Putative ATPase of the PP-loop superfamily implicated in cell cycle control {ECO:0000313|EMBL:AIG98201.1}; TaxID=1344584 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobacea
Putative uncharacterized protein
S_scaffold_135_2
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

739..2565
DNA (1827bp) protein (609aa)
chaperone protein DnaK
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP
Chaperone protein DnaK
S_scaffold_135_3
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2604..3755
DNA (1152bp) protein (384aa)
chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Methanosalsum z
Chaperone protein DnaJ
S_scaffold_135_4
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3815..4402)
DNA (588bp) protein (196aa)
Radical SAM domain protein {ECO:0000313|EMBL:AKB84888.1}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococc
radical SAM family Fe-S protein
Radical SAM family protein
S_scaffold_135_5
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(4404..5435)
DNA (1032bp) protein (344aa)
Diptheria toxin resistance protein required for diphthamide biosynthesis (Saccharomyces)-like 1 {ECO:0000313|EMBL:AKB79992.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosa
Diphthamide synthase subunit
Diphthamide synthase subunit
S_scaffold_135_6
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5420..6451)
DNA (1032bp) protein (344aa)
tRNA splicing endonuclease (EC:3.1.27.9)
tRNA-splicing endonuclease {ECO:0000256|HAMAP-Rule:MF_01834}; EC=4.6.1.16 {ECO:0000256|HAMAP-Rule:MF_01834};; tRNA-intron endonuclease {ECO:0000256|HAMAP-Rule:MF_01834}; TaxID=349307 species="Archaea;
tRNA-splicing endonuclease
S_scaffold_135_7
Methanothermobacter thermautotrophicus, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6477..7070)
DNA (594bp) protein (198aa)
hypothetical protein
Conserved protein {ECO:0000313|EMBL:AAB86108.1}; TaxID=187420 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.;" source="Methanothermobac
Conserved protein
S_scaffold_135_8
unknown

Not on your lists

comp(7078..7320)
DNA (243bp) protein (81aa)
S_scaffold_135_9
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7317..8639)
DNA (1323bp) protein (441aa)
Putative uncharacterized protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_135_10
Ferroglobus placidus, Ferroglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

8821..9498
DNA (678bp) protein (226aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADC64854.1}; TaxID=589924 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Ferroglobus.;" source="Ferroglobus placidus (strai
Uncharacterized protein
S_scaffold_135_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9657..9911)
DNA (255bp) protein (85aa)
glutaredoxin
Glutaredoxin
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_135_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10062..11246)
DNA (1185bp) protein (395aa)
Isocitrate/isopropylmalate dehydrogenase {ECO:0000313|EMBL:KCZ71994.1}; EC=1.1.1.85 {ECO:0000313|EMBL:KCZ71994.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; C
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase
S_scaffold_135_13
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11243..11728)
DNA (486bp) protein (162aa)
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate is
3-isopropylmalate dehydratase small subunit
S_scaffold_135_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11811..12806)
DNA (996bp) protein (332aa)
Pyruvate formate lyase activating protein-like uncharacterized Fe-S protein {ECO:0000313|EMBL:KCZ72106.1}; EC=1.97.1.4 {ECO:0000313|EMBL:KCZ72106.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Me
radical SAM protein
Radical SAM domain protein
S_scaffold_135_15
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12816..13493)
DNA (678bp) protein (226aa)
histidine biosynthesis
1-(5-phosphoribosyl)-5-((5 phosphoribosylamino) methylideneamino) imidazole-4-carboxamide isomerase-like protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_135_16
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13548..14252
DNA (705bp) protein (235aa)
hypothetical protein
UPF0264 protein Mpsy_1294 {ECO:0000256|HAMAP-Rule:MF_00681}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus
UPF0264 protein Mpsy_1294
S_scaffold_135_17
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14230..15444)
DNA (1215bp) protein (405aa)
LL-diaminopimelate aminotransferase
LL-diaminopimelate aminotransferase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_135_18
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15528..17522
DNA (1995bp) protein (665aa)
Iron transporter FeoB {ECO:0000313|EMBL:KKH94391.1}; TaxID=1483602 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp.
ferrous iron transporter B
Ferrous iron transport protein B
S_scaffold_135_19
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17618..17803
DNA (186bp) protein (62aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_53_curated
S_scaffold_135_20
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17804..18451
DNA (648bp) protein (216aa)
Iron-dependent repressor, putative {ECO:0000313|EMBL:AKB86085.1}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Met
iron (metal) dependent repressor, DtxR family
Iron (Metal) dependent repressor, DtxR family
S_scaffold_135_21
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18442..19653)
DNA (1212bp) protein (404aa)
Uncharacterized protein {ECO:0000313|EMBL:KGK97755.1}; TaxID=2226 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides
hypothetical protein
Putative uncharacterized protein
S_scaffold_135_22
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(19631..20323)
DNA (693bp) protein (231aa)
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; TaxID=869211 species="Bacteria; Spirochaetes; Spirochaetales; Spiro
ABC transporter
Transporter
S_scaffold_135_23
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(20310..21629)
DNA (1320bp) protein (440aa)
Cobyrinate a,c-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; EC=6.3.5.11 {ECO:0000256|HAMAP-Rule:MF_00027};; Cobyrinic acid a,c-diamide synthetase {ECO:0000256|HAMAP-Rule:MF_00027}; TaxID=523844
Cobyrinic acid A,C-diamide synthase
Probable cobyrinic acid A,C-diamide synthase
S_scaffold_135_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21629..22774)
DNA (1146bp) protein (382aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01402}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01402};; Short=Phosphoglyceromutase {ECO:0000256|HA
putative homoserine kinase
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
S_scaffold_135_25
unknown

Not on your lists

23252..24385
DNA (1134bp) protein (378aa)
S_scaffold_135_26
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

24382..25236
DNA (855bp) protein (285aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
Ribose-phosphate pyrophosphokinase
Ribose-phosphate pyrophosphokinase
S_scaffold_135_27

Not on your lists

25233..26120
DNA (888bp) protein (296aa)
Periplasmic serine protease {ECO:0000313|EMBL:AAU82184.1}; TaxID=285399 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos11A10.;"
signal peptide peptidase SppA, 36K type
Periplasmic serine protease
S_scaffold_135_28
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26117..26743
DNA (627bp) protein (209aa)
Uncharacterized protein {ECO:0000313|EMBL:KEQ21612.1}; TaxID=1501230 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MSt1.;"
iron(III) dicitrate transport system permease
Ferric ion ABC superfamily ATP binding cassette transporter
S_scaffold_135_29
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(26747..27724)
DNA (978bp) protein (326aa)
Biotin-(Acetyl-CoA carboxylase) ligase {ECO:0000313|EMBL:KCZ70289.1}; EC=6.3.4.15 {ECO:0000313|EMBL:KCZ70289.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Can
Biotin operon repressor (EC:6.3.4.15)
Biotin--(Acetyl-COA-carboxylase) synthetase
S_scaffold_135_30
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(27763..28410)
DNA (648bp) protein (216aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:M
Protein-L-isoaspartate O-methyltransferase
Displaying items 1-30 of 37 in total

View Taxonomy