ggKbase home page

S_scaffold_168

Alias: S_Methanogen_56_636_25

Search features with annotation key words

Displaying items 1-30 of 31 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_168_1
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(122..589)
DNA (468bp) protein (156aa)
Ig domain-containing protein
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:ACV62797.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomacu
Ig domain protein group 2 domain protein
S_scaffold_168_2
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(589..930)
DNA (342bp) protein (114aa)
parallel beta-helix repeat-containing protein
Parallel beta-helix repeat protein {ECO:0000313|EMBL:AEF96971.1}; TaxID=880724 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanoto
Parallel beta-helix repeat protein
S_scaffold_168_3
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

comp(1647..2891)
DNA (1245bp) protein (415aa)
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RBG_16_Micrarchaeota_36_9_curated
ABC transporter permease
ABC transporter, permease protein
S_scaffold_168_4
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

comp(2888..3829)
DNA (942bp) protein (314aa)
hypothetical protein Tax=RBG_16_Micrarchaeota_36_9_curated
hypothetical protein
Putative uncharacterized protein
S_scaffold_168_5
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

comp(3826..4512)
DNA (687bp) protein (229aa)
ABC-type transporters, involved in lipoprotein release, ATPase component; K02003 putative ABC transport system ATP-binding protein Tax=RBG_16_Micrarchaeota_36_9_curated
ABC transporter
ABC transporter related protein
S_scaffold_168_6
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

comp(5045..5815)
DNA (771bp) protein (257aa)
ABC transporter; K09686 antibiotic transport system permease protein Tax=RBG_13_Aminicenantes_63_10_curated
ABC transporter
ABC-2 type transporter, permease protein
S_scaffold_168_7

Not on your lists

comp(5812..6792)
DNA (981bp) protein (327aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM62635.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC transporter ATP-binding protein rbh
ABC transporter, ATP-binding protein
S_scaffold_168_8
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6944..7852
DNA (909bp) protein (303aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=11
Phosphoribosylaminoimidazole-succinocarboxamide synthase, putative
Phosphoribosylaminoimidazole-succinocarboxamide synthase, putative
S_scaffold_168_9
Geoglobus ahangari, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

7849..8319
DNA (471bp) protein (157aa)
Putative nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module {ECO:0000313|EMBL:AKG91804.1}; TaxID=113653 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archa
hypothetical protein
Uncharacterized protein
S_scaffold_168_10
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8314..9135)
DNA (822bp) protein (274aa)
hisF-2; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000255|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000255|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000255|HAMAP-Rule:MF_01013}; IGP
Imidazole glycerol phosphate synthase subunit HisF
S_scaffold_168_11
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9137..9424)
DNA (288bp) protein (96aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH61562.1}; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Methanosalsum zhil
Putative uncharacterized protein
S_scaffold_168_12
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9547..9957
DNA (411bp) protein (137aa)
thioredoxin
Thioredoxin {ECO:0000313|EMBL:ABK14501.1}; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta thermophila (strain
Thioredoxin
S_scaffold_168_13
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9978..11456
DNA (1479bp) protein (493aa)
Putative methanogenesis marker protein 14 {ECO:0000313|EMBL:ETA68501.1}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="
hypothetical protein
Uncharacterized protein
S_scaffold_168_14
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists


11453..12007
DNA (555bp) protein (185aa)
Ham1-like protein Tax=RBG_16_Euryarchaeota_41_19_curated
HamI-like protein
Non-canonical purine NTP pyrophosphatase
S_scaffold_168_15
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12004..12660
DNA (657bp) protein (219aa)
putative RNA methylase
Putative RNA methylase {ECO:0000313|EMBL:AGB50398.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethy
Putative RNA methylase
S_scaffold_168_16
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12641..13381
DNA (741bp) protein (247aa)
RNA-binding protein
Exosome complex component Csl4 {ECO:0000256|HAMAP-Rule:MF_00975}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocell
Putative RNA-binding protein
S_scaffold_168_17
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13387..13665
DNA (279bp) protein (93aa)
DNA-directed RNA polymerase subunit L (EC:2.7.7.6)
DNA-directed RNA polymerase subunit L {ECO:0000256|HAMAP-Rule:MF_00261}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00261};; TaxID=1434121 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinale
DNA-directed RNA polymerase subunit L
S_scaffold_168_18
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13665..14231
DNA (567bp) protein (189aa)
hypothetical protein
UPF0215 protein Metho_2208 {ECO:0000256|HAMAP-Rule:MF_00582}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Meth
UPF0215 protein Metho_2208
S_scaffold_168_19
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


14326..14895
DNA (570bp) protein (190aa)
DNA-directed RNA polymerase subunit E'
DNA-directed RNA polymerase, subunit E {ECO:0000313|EMBL:AET65267.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Metha
DNA-directed RNA polymerase, subunit E
S_scaffold_168_20
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14892..15077
DNA (186bp) protein (62aa)
rpoE2; putative DNA-directed RNA polymerase, subunit E2
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methan
Putative DNA-directed RNA polymerase, subunit E2
S_scaffold_168_21
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15079..15639
DNA (561bp) protein (187aa)
UPF0218 protein MCMEM_0431 {ECO:0000256|HAMAP-Rule:MF_00590}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methano
hypothetical protein
UPF0218 protein Mpsy_0973
S_scaffold_168_22
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15629..15943
DNA (315bp) protein (105aa)
30S ribosomal protein S24e
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545, ECO:0000256|RuleBase:RU004382}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methan
30S ribosomal protein S24e
S_scaffold_168_23
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

15964..16113
DNA (150bp) protein (50aa)
SSU ribosomal protein S27AE
30S ribosomal protein S27ae {ECO:0000256|HAMAP-Rule:MF_00777}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus sul
SSU ribosomal protein S27AE
S_scaffold_168_24
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16113..16292
DNA (180bp) protein (60aa)
hypothetical protein
Uncharacterized protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_168_25
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


16307..16882
DNA (576bp) protein (192aa)
30S ribosomal protein S3Ae
30S ribosomal protein S3Ae {ECO:0000256|HAMAP-Rule:MF_00359, ECO:0000256|SAAS:SAAS00194211}; Ribosomal protein S1e {ECO:0000256|HAMAP-Rule:MF_00359}; TaxID=679901 species="Archaea; Euryarchaeota; Meth
30S ribosomal protein S3Ae
S_scaffold_168_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16887..17639
DNA (753bp) protein (251aa)
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:KCZ72557.1}; EC=2.1.1.107 {ECO:0000313|EMBL:KCZ72557.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Cand
Uroporphyrinogen-III methyltransferase
Uroporphyrin-III C-methyltransferase
S_scaffold_168_27
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17636..18385
DNA (750bp) protein (250aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:ETA67136.1}; EC=4.2.1.75 {ECO:0000313|EMBL:ETA67136.1};; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarci
hemD; uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase
S_scaffold_168_28

Not on your lists

18378..19445
DNA (1068bp) protein (356aa)
Probable histidinol-phosphate aminotransferase {ECO:0000313|EMBL:CAI64215.1}; EC=2.6.1.9 {ECO:0000313|EMBL:CAI64215.1};; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured arch
cobD; putative L-threonine-O-3-phosphate decarboxylase (EC:4.1.1.81)
Probable histidinol-phosphate aminotransferase
S_scaffold_168_29
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19440..20663)
DNA (1224bp) protein (408aa)
hypothetical protein
bmx:BMS_3256 putative selenocysteine lyase alias=RAAC2_WWE3_C00001G00834,RAAC2_WWE3_834 id=725881 tax=RAAC2_WWE3 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=WWE3
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
S_scaffold_168_30
unknown

Not on your lists

comp(20664..20957)
DNA (294bp) protein (98aa)
Displaying items 1-30 of 31 in total

View Taxonomy