ggKbase home page

S_scaffold_171

Alias: S_Methanogen_56_636_20

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_scaffold_171_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

337..1236
DNA (900bp) protein (300aa)
N-glycosylase/DNA lyase (EC:4.2.99.18) Tax=RBG_13_Bathyarchaeota_46_16b_curated
N-glycosylase/DNA lyase (EC:4.2.99.18)
8-oxoguanine DNA glycosylase
S_scaffold_171_2
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1247..1726
DNA (480bp) protein (160aa)
hypothetical protein
UPF0179 protein Mthe_0220 {ECO:0000255|HAMAP-Rule:MF_00498}; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta th
UPF0179 protein Mthe_0220
S_scaffold_171_3
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1731..2279
DNA (549bp) protein (183aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1110509 species="A
2'-5' RNA ligase
2'-5' RNA ligase
S_scaffold_171_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


2283..3623
DNA (1341bp) protein (447aa)
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01264}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01264};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA CCA-pyrophosphorylase {ECO:
cca; CCA-adding enzyme
CCA-adding enzyme
S_scaffold_171_5
Methanosarcina sp. WH1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3614..4582)
DNA (969bp) protein (323aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:AKB23238.1}; EC=5.1.3.2 {ECO:0000313|EMBL:AKB23238.1};; TaxID=1434102 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
dTDP-glucose 4,6-dehydratase
dTDP-glucose 4,6-dehydratase
S_scaffold_171_6
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(4625..5299)
DNA (675bp) protein (225aa)
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEF96684.1}; TaxID=880724 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanotorr
Putative uncharacterized protein
S_scaffold_171_7
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5374..6627
DNA (1254bp) protein (418aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAM
glycine/serine hydroxymethyltransferase
Serine hydroxymethyltransferase
S_scaffold_171_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6636..7514
DNA (879bp) protein (293aa)
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperede
Bifunctional protein FolD
S_scaffold_171_9
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7518..8333
DNA (816bp) protein (272aa)
Dihydropteroate synthase {ECO:0000313|EMBL:AKB79546.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina
dihydropteroate synthase
Dihydropteroate synthase
S_scaffold_171_10
Geoglobus acetivorans, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

8373..8900
DNA (528bp) protein (176aa)
(2Fe-2S)-binding protein
(2Fe-2S)-binding protein {ECO:0000313|EMBL:AIY89493.1}; TaxID=565033 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Geoglobus.;" source="Geoglobus acetivorans.;"
BFD domain protein (2Fe-2S)-binding domain protein
S_scaffold_171_11
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8954..10216
DNA (1263bp) protein (421aa)
pan-2; proteasome-activating nucleotidase
Proteasome-activating nucleotidase {ECO:0000256|HAMAP-Rule:MF_00553}; Short=PAN {ECO:0000256|HAMAP-Rule:MF_00553};; Proteasomal ATPase {ECO:0000256|HAMAP-Rule:MF_00553}; Proteasome regulatory ATPase {
Proteasome-activating nucleotidase
S_scaffold_171_12
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10230..11531)
DNA (1302bp) protein (434aa)
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ADI74296.1}; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobiu
4Fe-4S ferredoxin iron-sulfur binding domain protein
S_scaffold_171_13
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11537..11761)
DNA (225bp) protein (75aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC20778.1}; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moor
Putative uncharacterized protein
S_scaffold_171_14
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(11818..13164)
DNA (1347bp) protein (449aa)
efflux protein, MATE family Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
putative multidrug resistance protein
Methanoculleus bourgensis MS2 complete genome
S_scaffold_171_15
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13172..13810)
DNA (639bp) protein (213aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI72971.1}; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanohalobium
Uncharacterized protein
S_scaffold_171_16
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13834..17061)
DNA (3228bp) protein (1076aa)
carbamoyl-phosphate synthase, large subunit
Carbamoyl-phosphate synthase, large subunit {ECO:0000313|EMBL:AGB49319.1}; Flags: Precursor;; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Meth
Carbamoyl-phosphate synthase large chain
S_scaffold_171_17
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(17061..18134)
DNA (1074bp) protein (358aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_012
carbamoyl-phosphate synthase small subunit
Carbamoyl-phosphate synthase small chain
S_scaffold_171_18
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18309..19511)
DNA (1203bp) protein (401aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:AET63986.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methano
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
S_scaffold_171_19
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19495..20712)
DNA (1218bp) protein (406aa)
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ADE37217.1}; TaxID=547558 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalophilus.;" source="Metha
Metal dependent phosphohydrolase
S_scaffold_171_20
Thermovirga lienii, Thermovirga, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(20966..22336)
DNA (1371bp) protein (457aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransfera
hypothetical protein rbh
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
S_scaffold_171_21
Thermovirga lienii, Thermovirga, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(22290..24437)
DNA (2148bp) protein (716aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=580340 species="Bacteria; Synergiste
DNA topoisomerase I rbh
DNA topoisomerase
S_scaffold_171_22
unknown

Not on your lists

24480..25010
DNA (531bp) protein (177aa)
Displaying 22 items

View Taxonomy