ggKbase home page

SCN18_25_1_16_R1_B_scaffold_420

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_420_1
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..842)
DNA (840bp) protein (280aa)
Replication initiation factor n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UBK9_RALPJ
Marine sediment metagenome DNA, contig: S06H3_C00031 {ECO:0000313|EMBL:GAH92008.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
replication initiation factor
SCN18_25_1_16_R1_B_scaffold_420_2
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(839..1525)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RYW5_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48731.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_25_1_16_R1_B_scaffold_420_3
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1626..1913
DNA (288bp) protein (96aa)
SCN18_25_1_16_R1_B_scaffold_420_trna_1
unknown

Not on your lists

comp(1871..1958)
DNA (88bp)
transferRNA Ser
SCN18_25_1_16_R1_B_scaffold_420_4
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2047..3348)
DNA (1302bp) protein (434aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
seryl-tRNA synthetase (EC:6.1.1.11)
seryl-tRNA synthetase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003682F13
SCN18_25_1_16_R1_B_scaffold_420_5
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3480..5057)
DNA (1578bp) protein (526aa)
ATPase AAA n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003664C56
FIG065221: Holliday junction DNA helicase
Recombination factor protein RarA {ECO:0000313|EMBL:KGF31001.1}; TaxID=1401065 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Oligella.;" source="Oligella urethralis DNF00040.;"
SCN18_25_1_16_R1_B_scaffold_420_6
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5035..6297)
DNA (1263bp) protein (421aa)
MFS transporter n=1 Tax=Curvibacter lanceolatus RepID=UPI00036ED0A0
major facilitator superfamily protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCN18_25_1_16_R1_B_scaffold_420_7
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6440..7573)
DNA (1134bp) protein (378aa)
Low-specificity D-threonine aldolase n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6STY6_JANMA
low-specificity D-threonine aldolase
Low-specificity D-threonine aldolase {ECO:0000313|EMBL:ABR89770.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
SCN18_25_1_16_R1_B_scaffold_420_8
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7557..8195)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000372E588
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; Flags: Precursor;; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
lolA; Outer membrane lipoprotein carrier protein LolA
SCN18_25_1_16_R1_B_scaffold_420_9
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8195..10570)
DNA (2376bp) protein (792aa)
cell division protein FtsK n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002E78DAF
Cell division protein FtsK {ECO:0000313|EMBL:KIF82406.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
ftsK; DNA translocase
SCN18_25_1_16_R1_B_scaffold_420_10
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10590..11264)
DNA (675bp) protein (225aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW32_9BURK
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EFV95515.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Crp/Fnr family transcriptional regulator
SCN18_25_1_16_R1_B_scaffold_420_11
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11423..12382
DNA (960bp) protein (320aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=640512 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1003).;"
Thioredoxin reductase n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1TBH3_BURSG
thioredoxin reductase
SCN18_25_1_16_R1_B_scaffold_420_12
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12400..13071
DNA (672bp) protein (224aa)
Smr protein/MutS2 n=1 Tax=Ralstonia sp. PBA RepID=I9W300_9RALS
hypothetical protein
Smr protein/MutS2 {ECO:0000313|EMBL:EIZ02807.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
SCN18_25_1_16_R1_B_scaffold_420_13
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13075..13731)
DNA (657bp) protein (219aa)
4-diphosphocytidyl-2C-methyl-D-erythritol synthase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SLF6_RHOMR
4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_25_1_16_R1_B_scaffold_420_14
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13776..14432
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6X0F6_9RHOO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCN18_25_1_16_R1_B_scaffold_420_15
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14465..14809)
DNA (345bp) protein (115aa)
Nitrogen regulatory protein P-II 1 n=1 Tax=mine drainage metagenome RepID=E6PT02_9ZZZZ
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:CBH98059.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nitrogen regulatory protein P-II
SCN18_25_1_16_R1_B_scaffold_420_16
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14917..16530)
DNA (1614bp) protein (538aa)
nadE1; NAD synthetase (EC:6.3.5.1)
NAD+ synthase (Glutamine-hydrolysing) {ECO:0000313|EMBL:ABR88483.1}; EC=6.3.5.1 {ECO:0000313|EMBL:ABR88483.1};; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
NAD synthetase n=1 Tax=Herbaspirillum lusitanum RepID=UPI000305C40E
SCN18_25_1_16_R1_B_scaffold_420_17
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16545..17774
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R326_CUPTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ68707.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCN18_25_1_16_R1_B_scaffold_420_18
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17669..19129)
DNA (1461bp) protein (487aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XEG5_METSD
NodT family RND efflux system outer membrane lipoprotein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCN18_25_1_16_R1_B_scaffold_420_19
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19126..22251)
DNA (3126bp) protein (1042aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WR45_9BURK
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCN18_25_1_16_R1_B_scaffold_420_20
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22268..23560)
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003659E5D
secretion protein HlyD
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCN18_25_1_16_R1_B_scaffold_420_21
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23585..24208
DNA (624bp) protein (208aa)
Transcriptional regulator, TetR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB71_NITMU
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABB74000.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCN18_25_1_16_R1_B_scaffold_420_22
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24262..24810)
DNA (549bp) protein (183aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
Inorganic pyrophosphatase n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) RepID=A4SWN9_POLSQ
inorganic pyrophosphatase
SCN18_25_1_16_R1_B_scaffold_420_23
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24962..26128)
DNA (1167bp) protein (389aa)
Porphyrin biosynthesis protein n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VWN5_9BURK
Heme biosynthesis protein HemY {ECO:0000313|EMBL:KFI06479.1}; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_420_24
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26125..27321)
DNA (1197bp) protein (399aa)
hemX; uroporphyrin-III C-methyltransferase (EC:2.1.1.107)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DP14_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCN18_25_1_16_R1_B_scaffold_420_25
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27321..28100)
DNA (780bp) protein (260aa)
Probable bifunctional: uroporphyrin-III c-methyltransferase and uroporphyrinogen-III synthase transmembrane protein (EC:2.1.1.107 4.2.1.75)
Bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:EON14129.1}; EC=4.2.1.75 {ECO:0000313|EMBL:EON14129.1};; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
Bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X3S2_9BURK
SCN18_25_1_16_R1_B_scaffold_420_26
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28082..29044)
DNA (963bp) protein (321aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
porphobilinogen deaminase (EC:2.5.1.61)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00037F967F
SCN18_25_1_16_R1_B_scaffold_420_27
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29113..29913)
DNA (801bp) protein (267aa)
Response regulator receiver domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW44_9BURK
Response regulator receiver domain protein {ECO:0000313|EMBL:EFV95527.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
algR; alginate biosynthesis regulatory protein AlgR
SCN18_25_1_16_R1_B_scaffold_420_28
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29882..31039)
DNA (1158bp) protein (386aa)
Histidine kinase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW45_9BURK
Histidine kinase {ECO:0000313|EMBL:EFV95528.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
two-component system sensor ATPase
SCN18_25_1_16_R1_B_scaffold_420_29
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31143..32546
DNA (1404bp) protein (468aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW46_9BURK
Displaying items 1-30 of 34 in total

View Taxonomy