ggKbase home page

SCN18_30_10_14_R2_B_scaffold_1893

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1893_1
CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, Eukaryote

Not on your lists

136..1305
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C57B7
SCN18_30_10_14_R2_B_scaffold_1893_2
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1315..1815)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4FEA
Putative regulatory subunit {ECO:0000313|EMBL:AAX07514.1}; TaxID=235140 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gemmata.;" source="Gemmata sp. Wa1-1.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1893_3
unknown

Not on your lists

comp(1827..2099)
DNA (273bp) protein (91aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1893_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2475..2897
DNA (423bp) protein (141aa)
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
SCN18_30_10_14_R2_B_scaffold_1893_5
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2899..3108)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9ULD2_9CHRO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY95902.1}; TaxID=1173020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Chamaesiphon.;" source="Chamaesiphon minutus PCC 6605.;"
SCN18_30_10_14_R2_B_scaffold_1893_trna_1
unknown

Not on your lists

comp(3370..3440)
DNA (71bp)
transferRNA Gln
SCN18_30_10_14_R2_B_scaffold_1893_6
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(3769..4134)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI0003692AB1
bleomycin resistance protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCN18_30_10_14_R2_B_scaffold_1893_7
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4417..4884
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1E6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19558.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCN18_30_10_14_R2_B_scaffold_1893_8
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(5072..6445)
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003623BA3
Uncharacterized protein {ECO:0000313|EMBL:EDL60461.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1893_9
SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, Gemmatimonadetes, Bacteria

Not on your lists

comp(6637..7209)
DNA (573bp) protein (191aa)
2''''-5'''' RNA ligase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C441C
2'-5' RNA ligase
Tax=RBG_13_Planctomycetes_63_9_curated
SCN18_30_10_14_R2_B_scaffold_1893_10
SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, Kapabacteria

Not on your lists

comp(7304..8296)
DNA (993bp) protein (331aa)
ribokinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C441D
PfkB domain-containing protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCN18_30_10_14_R2_B_scaffold_1893_11
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8420..9979)
DNA (1560bp) protein (520aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
glutamyl-tRNA synthetase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C441E
glutamyl-tRNA synthetase
SCN18_30_10_14_R2_B_scaffold_1893_12
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10135..10641)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030F0F55
MaoC domain-containing protein dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ADV61398.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCN18_30_10_14_R2_B_scaffold_1893_13
scnpilot_dereplicated_Plasmid_unknown_1, scnpilot_dereplicated_Plasmid_unknown_1, scnpilot_dereplicated_Plasmid_unknown_1, scnpilot_dereplicated_Plasmid_unknown_1, scnpilot_dereplicated_Plasmid_unknown_1, Plasmid-like

Not on your lists

10989..11744
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3F2F
Uncharacterized protein {ECO:0000313|EMBL:KKN79456.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1893_14
unknown

Not on your lists

11833..12273
DNA (441bp) protein (147aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1893_15
unknown

Not on your lists

12362..12808
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002DAB1CB
SCN18_30_10_14_R2_B_scaffold_1893_16
unknown

Not on your lists

12858..13121
DNA (264bp) protein (88aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1893_17
unknown

Not on your lists

13211..16078
DNA (2868bp) protein (956aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4F07
SCN18_30_10_14_R2_B_scaffold_1893_18
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

16102..16926
DNA (825bp) protein (275aa)
Rhomboid family protein n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SF61_PLABD
rhomboid family protein
Rhomboid family protein {ECO:0000313|EMBL:ADY58216.1}; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
SCN18_30_10_14_R2_B_scaffold_1893_19
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16932..17438
DNA (507bp) protein (169aa)
pta; acetyltransferase (EC:2.3.1.8)
acetyltransferase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4CB0
Putative acetyltransferase {ECO:0000313|EMBL:ACO70893.1}; TaxID=156588 species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
SCN18_30_10_14_R2_B_scaffold_1893_20
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17564..18820)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003018B82
Precorrin-6Y C5,15-methyltransferase / precorrin-8W decarboxylase {ECO:0000313|EMBL:BAL55987.1}; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
precorrin-6y C5,15-methyltransferase subunit CbiE/precorrin-6Y C5,15-methyltransferase subunit CbiT
SCN18_30_10_14_R2_B_scaffold_1893_21
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

19044..20420
DNA (1377bp) protein (459aa)
Tetratricopeptide repeat protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3695
hypothetical protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDL56706.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
SCN18_30_10_14_R2_B_scaffold_1893_22
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20478..20930)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D76091
Uncharacterized protein {ECO:0000313|EMBL:KFC94659.1}; TaxID=1005999 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Leminorella.;" source="Leminorella grimontii ATCC 33999 = DSM 5078.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1893_23
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21089..21652
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3693
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG65983.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
Displaying 24 items

View Taxonomy