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SCN18_25_8_15_R2_B_scaffold_2009

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2009_1
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..188)
DNA (186bp) protein (62aa)
Elongation factor Tu n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH5_ALIDB
translation elongation factor tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCN18_25_8_15_R2_B_scaffold_2009_trna_4
unknown

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comp(267..338)
DNA (72bp)
transferRNA Thr
SCN18_25_8_15_R2_B_scaffold_2009_trna_3
unknown

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comp(384..454)
DNA (71bp)
transferRNA Gly
SCN18_25_8_15_R2_B_scaffold_2009_trna_2
unknown

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comp(506..588)
DNA (83bp)
transferRNA Tyr
SCN18_25_8_15_R2_B_scaffold_2009_trna_1
unknown

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comp(739..811)
DNA (73bp)
transferRNA Arg
SCN18_25_8_15_R2_B_scaffold_2009_2
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(845..1465)
DNA (621bp) protein (207aa)
Regulatory protein TetR n=2 Tax=Alicycliphilus denitrificans RepID=E8TVL7_ALIDB
TetR family transcriptional regulator
Tetracycline transcriptional repressor MAATS-type domain-containing protein {ECO:0000313|EMBL:AEB82825.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_2009_3
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1655..2935
DNA (1281bp) protein (427aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TVL6_ALIDB
RND family efflux transporter MFP subunit
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:GAO26139.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_2009_4
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2954..6109
DNA (3156bp) protein (1052aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=2 Tax=Alicycliphilus denitrificans RepID=E8TVL5_ALIDB
Hydrophobe/amphiphile efflux-1 family transporter {ECO:0000313|EMBL:GAO26138.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
SCN18_25_8_15_R2_B_scaffold_2009_5
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6134..7579
DNA (1446bp) protein (482aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVL4_ALIDB
rnd efflux system, outer membrane lipoprotein, nodt family
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:GAO26137.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_2009_6
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7976..8812
DNA (837bp) protein (279aa)
Cytochrome c class I n=2 Tax=Alicycliphilus denitrificans RepID=E8TVL3_ALIDB
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:ADU98223.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_2009_7
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8859..9395)
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVL2_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU98222.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_2009_8
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9441..9875)
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVL1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO26134.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_2009_9
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10028..10633
DNA (606bp) protein (202aa)
LemA family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVL0_ALIDB
LemA family protein
LemA family protein {ECO:0000313|EMBL:ADU98220.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_2009_10
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10637..11524
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GG33_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB82817.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_2009_11
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11538..12071
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GG32_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB82816.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_2009_12
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12184..12600)
DNA (417bp) protein (139aa)
ATP synthase epsilon chain n=2 Tax=Alicycliphilus denitrificans RepID=E8TVK6_ALIDB
ATP synthase F1 subunit epsilon
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_2009_13
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12681..14090)
DNA (1410bp) protein (470aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
ATP synthase subunit beta n=2 Tax=Alicycliphilus denitrificans RepID=E8TVK5_ALIDB
ATP synthase F1 subunit beta
SCN18_25_8_15_R2_B_scaffold_2009_14
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14119..14988)
DNA (870bp) protein (290aa)
ATP synthase gamma chain n=2 Tax=Alicycliphilus denitrificans RepID=E8TVK4_ALIDB
ATP synthase F1 subunit gamma
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_2009_15
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15007..15819)
DNA (813bp) protein (271aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
ATP synthase subunit alpha n=2 Tax=Alicycliphilus denitrificans RepID=E8TVK3_ALIDB
ATP synthase F1 subunit alpha
Displaying 19 items

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