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SCN18_14_9_16_R4_B_scaffold_1038

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_1038_1
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..2303)
DNA (2301bp) protein (767aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000367C11B
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCN18_14_9_16_R4_B_scaffold_1038_2
unknown

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comp(2382..2669)
DNA (288bp) protein (96aa)

This feature has no annotations

SCN18_14_9_16_R4_B_scaffold_1038_3
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2673..3557)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J3AMQ2_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL33579.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1038_4
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3643..4425)
DNA (783bp) protein (261aa)
LytTR family two component transcriptional regulator n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S9A9_9SPHN
LytTR family two component transcriptional regulator {ECO:0000313|EMBL:KGM53651.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
LytTR family two component transcriptional regulator
SCN18_14_9_16_R4_B_scaffold_1038_5
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4425..5510)
DNA (1086bp) protein (362aa)
signal transduction histidine kinase, LytS n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A04F
signal transduction histidine kinase LytS
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_14_9_16_R4_B_scaffold_1038_6
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5724..6119
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SI27_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ24913.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1038_7
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6302..7306)
DNA (1005bp) protein (335aa)
TonB-dependent siderophore receptor n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TB00_9GAMM
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AJP73744.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_14_9_16_R4_B_scaffold_1038_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7806..8195
DNA (390bp) protein (130aa)
photosystem reaction center subunit H n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B35CAE
Uncharacterized protein {ECO:0000313|EMBL:EQB12932.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
PRC-barrel domain-containing protein
SCN18_14_9_16_R4_B_scaffold_1038_9
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8207..8416
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4942E
Uncharacterized protein {ECO:0000313|EMBL:AHE56839.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCN18_14_9_16_R4_B_scaffold_1038_10
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8524..10041
DNA (1518bp) protein (506aa)
histidine kinase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B70A9B
Signal transduction histidine kinase {ECO:0000313|EMBL:EIZ80886.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
signal transduction histidine kinase
SCN18_14_9_16_R4_B_scaffold_1038_11
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10254..10451)
DNA (198bp) protein (66aa)
transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B540FC
ScaffoldA29, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29395.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCN18_14_9_16_R4_B_scaffold_1038_12
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10903..12162)
DNA (1260bp) protein (420aa)
arsenic transporter n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B592D3
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
arsenic transporter
SCN18_14_9_16_R4_B_scaffold_1038_13
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12159..13415)
DNA (1257bp) protein (419aa)
major facilitator transporter n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4D999
Major Facilitator Superfamily {ECO:0000313|EMBL:AGU10506.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
major facilitator transporter
SCN18_14_9_16_R4_B_scaffold_1038_14
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13454..14773)
DNA (1320bp) protein (440aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
two component sensor histidine kinase transcriptional regulatory protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630CEB
histidine kinase
SCN18_14_9_16_R4_B_scaffold_1038_15
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14770..15438)
DNA (669bp) protein (223aa)
transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6BB83
Scaffold31, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30217.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
transcriptional regulator
SCN18_14_9_16_R4_B_scaffold_1038_16
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15547..15771
DNA (225bp) protein (75aa)
hypothetical protein, partial n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000371AC2F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT06714.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
Displaying 16 items

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