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SCN18_14_9_16_R4_B_scaffold_1621

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_1621_1
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(280..1155)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WY93_RHOS5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP72357.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
SCN18_14_9_16_R4_B_scaffold_1621_2
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1461..1904
DNA (444bp) protein (148aa)
Ribose 5-phosphate isomerase B n=1 Tax=Sphingomonas sp. S17 RepID=F3WU55_9SPHN
RpiB protein {ECO:0000313|EMBL:GAN13488.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
RpiB/LacA/LacB family sugar-phosphate isomerase
SCN18_14_9_16_R4_B_scaffold_1621_3
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1921..3228
DNA (1308bp) protein (436aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
serine hydroxymethyltransferase n=1 Tax=Sphingomonas melonis RepID=UPI00038062BF
SCN18_14_9_16_R4_B_scaffold_1621_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3238..3414
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037A9E0E
Uncharacterized protein {ECO:0000313|EMBL:EZP50299.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCN18_14_9_16_R4_B_scaffold_1621_5
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3422..3883
DNA (462bp) protein (154aa)
NrdR family transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7AD23
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
NrdR family transcriptional regulator
SCN18_14_9_16_R4_B_scaffold_1621_6
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3880..4608
DNA (729bp) protein (243aa)
rRNA methyltransferase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488F3B
Sphingomonas taxi strain 30a NODE_34, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26167.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rRNA methyltransferase
SCN18_14_9_16_R4_B_scaffold_1621_7
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4619..5947)
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002F057DD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ71120.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_1621_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5998..7839)
DNA (1842bp) protein (614aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000381D49B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY39412.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
SCN18_14_9_16_R4_B_scaffold_1621_9
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7888..8601
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI00036FA546
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABF52414.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCN18_14_9_16_R4_B_scaffold_1621_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8702..10471
DNA (1770bp) protein (590aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V6D3_SPHWW
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABQ67849.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_1621_trna_1
unknown

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comp(10527..10599)
DNA (73bp)
transferRNA Phe
SCN18_14_9_16_R4_B_scaffold_1621_11
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10629..10802)
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DA3B7F
DNA, contig: SP619 {ECO:0000313|EMBL:GAN13516.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1621_12
unknown

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comp(10799..10891)
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying 13 items

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