ggKbase home page

SCN18_14_9_16_R4_B_scaffold_1829

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_1829_1
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7..1371)
DNA (1365bp) protein (455aa)
L-serine ammonia-lyase n=1 Tax=Sphingomonas sp. S17 RepID=F3WVP0_9SPHN
L-serine dehydratase {ECO:0000313|EMBL:GAM01280.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
L-serine dehydratase 1
SCN18_14_9_16_R4_B_scaffold_1829_2
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1475..2797)
DNA (1323bp) protein (441aa)
histidine kinase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5B194
sensor signal transduction histidine kinase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_14_9_16_R4_B_scaffold_1829_3
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2794..3462)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037BC0C4
Sphingomonas taxi strain 30a NODE_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28471.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
transcriptional regulator
SCN18_14_9_16_R4_B_scaffold_1829_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3539..4063)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C144
DNA, contig: SP643 {ECO:0000313|EMBL:GAN14722.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1829_5
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4220..4933
DNA (714bp) protein (238aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ribonuclease PH n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC5A5
ribonuclease PH
SCN18_14_9_16_R4_B_scaffold_1829_6
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4930..5556
DNA (627bp) protein (209aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381CA57
nucleoside-triphosphate diphosphatase
SCN18_14_9_16_R4_B_scaffold_1829_7
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5602..6471)
DNA (870bp) protein (290aa)
Sphingomonas taxi strain 30a NODE_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26586.1}; EC=1.1.1.157 {ECO:0000313|EMBL:KIU26586.1};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B469D5
SCN18_14_9_16_R4_B_scaffold_1829_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6681..7589)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000369EAF0
Flagellar motor protein {ECO:0000313|EMBL:KHA65664.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
flagellar motor protein
SCN18_14_9_16_R4_B_scaffold_1829_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7591..8454)
DNA (864bp) protein (288aa)
flagellar motor protein MotA n=2 Tax=Sphingomonas melonis RepID=UPI00037DC318
Sphingomonas taxi strain 30a NODE_39, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26802.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
flagellar motor protein MotA
SCN18_14_9_16_R4_B_scaffold_1829_10
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8556..9446)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000368CD83
Uncharacterized protein {ECO:0000313|EMBL:KHA65736.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1829_11
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9446..9769)
DNA (324bp) protein (108aa)
flagellar hook protein FlgK n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD07D
flagellar hook protein FlgK
Flagellar hook protein FlgK {ECO:0000313|EMBL:AJP73525.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Displaying 11 items

View Taxonomy