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SCN18_14_9_16_R4_B_scaffold_553

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_553_1
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..442
DNA (441bp) protein (147aa)
Membrane protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2J0L1_9BURK
Membrane protein {ECO:0000313|EMBL:ESJ23757.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
TerC family membrane protein
SCN18_14_9_16_R4_B_scaffold_553_2
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

616..1641
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3B7I1_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:GAD62823.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
sulfatase
SCN18_14_9_16_R4_B_scaffold_553_3
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1731..2189)
DNA (459bp) protein (153aa)
membrane protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003644EEB
Uncharacterized protein {ECO:0000313|EMBL:GAM01000.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
membrane protein
SCN18_14_9_16_R4_B_scaffold_553_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2189..3208)
DNA (1020bp) protein (340aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
uroporphyrinogen decarboxylase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6216A
uroporphyrinogen decarboxylase
SCN18_14_9_16_R4_B_scaffold_553_5
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3651..4481
DNA (831bp) protein (277aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
PEP synthetase regulatory protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003725BDE
phosphate kinase
SCN18_14_9_16_R4_B_scaffold_553_6
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4478..5068
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003773785
Maf-like protein SP6_55_00510 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
septum formation protein Maf
SCN18_14_9_16_R4_B_scaffold_553_7
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5065..5877
DNA (813bp) protein (271aa)
Shikimate dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG67_9SPHN
shikimate 5-dehydrogenase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCN18_14_9_16_R4_B_scaffold_553_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5874..6467
DNA (594bp) protein (198aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003723424
dephospho-CoA kinase
SCN18_14_9_16_R4_B_scaffold_553_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6475..7170
DNA (696bp) protein (232aa)
DNA polymerase III, epsilon subunit n=1 Tax=Sphingomonas sp. S17 RepID=F3WY82_9SPHN
DNA polymerase III epsilon subunit {ECO:0000313|EMBL:GAM01006.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
DNA polymerase III subunit epsilon
SCN18_14_9_16_R4_B_scaffold_553_10
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7223..7807
DNA (585bp) protein (195aa)
Ribosomal subunit interface protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WY81_9SPHN
DNA, contig: SP655 {ECO:0000313|EMBL:GAN15329.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
30S ribosomal protein S30
SCN18_14_9_16_R4_B_scaffold_553_11
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7826..8296
DNA (471bp) protein (157aa)
nitrogen regulatory protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3C176
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:AGH49772.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_14_9_16_R4_B_scaffold_553_12
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8283..8738
DNA (456bp) protein (152aa)
thioesterase n=1 Tax=Sphingomonas elodea RepID=UPI000263161F
Thioesterase {ECO:0000313|EMBL:KHA65004.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
thioesterase
SCN18_14_9_16_R4_B_scaffold_553_13
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8735..9064
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD047
Uncharacterized protein {ECO:0000313|EMBL:KHA64977.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_553_14
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9226..9870
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B403CE
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26410.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cell wall hydrolase SleB
SCN18_14_9_16_R4_B_scaffold_553_15
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9908..10408
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037AD3B4
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26409.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
transcription elongation factor
SCN18_14_9_16_R4_B_scaffold_553_16
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10932..11528)
DNA (597bp) protein (199aa)
Ankyrin repeat family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X264_9SPHN
DNA, contig: SP628 {ECO:0000313|EMBL:GAN13809.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ankyrin
SCN18_14_9_16_R4_B_scaffold_553_17
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11592..12176
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000361AD1A
Electron transporter {ECO:0000313|EMBL:KHA64975.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
electron transport protein SCO1/SenC
SCN18_14_9_16_R4_B_scaffold_553_18
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12173..12604
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037CF037
hypothetical protein
UPF0260 protein TS85_19985 {ECO:0000256|HAMAP-Rule:MF_00676}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_14_9_16_R4_B_scaffold_553_19
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12601..13278
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003627CA5
Uncharacterized protein {ECO:0000313|EMBL:EZP49224.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
metal-dependent hydrolase
SCN18_14_9_16_R4_B_scaffold_553_20
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13251..15380)
DNA (2130bp) protein (710aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037421F9
Penicillin-binding , 1A family protein {ECO:0000313|EMBL:EZP49225.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
penicillin-binding protein
SCN18_14_9_16_R4_B_scaffold_553_21
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15431..15826)
DNA (396bp) protein (132aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
methionine sulfoxide reductase B n=1 Tax=Sphingomonas elodea RepID=UPI0002631628
methionine sulfoxide reductase B
SCN18_14_9_16_R4_B_scaffold_553_22
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15878..16402)
DNA (525bp) protein (175aa)
pathogenesis-like protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B40952
pathogenesis-like protein
Pathogenesis-related protein {ECO:0000313|EMBL:BAK66195.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_14_9_16_R4_B_scaffold_553_23
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16471..17151)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288B77E
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66196.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_14_9_16_R4_B_scaffold_553_24
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17135..17788)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6D350
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE83038.1}; TaxID=59505 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinotignum.;" source="Actinotignum schaalii.;"
SCN18_14_9_16_R4_B_scaffold_553_25
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18392..19963)
DNA (1572bp) protein (524aa)
FAD dependent oxidoreductase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T5Q6_CAUSK
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABZ71064.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_14_9_16_R4_B_scaffold_553_26
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20246..21427
DNA (1182bp) protein (394aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KJE21827.1}; EC=1.3.8.7 {ECO:0000313|EMBL:KJE21827.1};; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
acyl-CoA dehydrogenase (EC:1.3.99.2)
Putative acyl-CoA dehydrogenase n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RKD0_FRAAA
SCN18_14_9_16_R4_B_scaffold_553_27
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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21611..22810
DNA (1200bp) protein (400aa)
Putative acyl-CoA dehydrogenase n=1 Tax=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) RepID=B1VMX9_STRGG
acyl-CoA dehydrogenase
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAG23604.1}; TaxID=455632 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350).;"
SCN18_14_9_16_R4_B_scaffold_553_28
SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22843..23973
DNA (1131bp) protein (377aa)
Acyl-CoA dehydrogenase n=1 Tax=gamma proteobacterium BDW918 RepID=I2JNN6_9GAMM
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EIF44588.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
acyl-CoA dehydrogenase
SCN18_14_9_16_R4_B_scaffold_553_29
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24008..25288
DNA (1281bp) protein (427aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Mycobacterium tusciae JS617 RepID=H1K5J8_9MYCO
Acyl-CoA hydratase {ECO:0000313|EMBL:KHO21204.1}; TaxID=431269 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium setense.;"
putative acyl-CoA transferase/carnitine dehydratase
Displaying 29 items

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