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SCN18_14_9_16_R4_B_scaffold_753

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_753_1
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..230
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028A243F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJA09231.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCN18_14_9_16_R4_B_scaffold_753_2
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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372..896
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036ECD25
Uncharacterized protein {ECO:0000313|EMBL:AHE53432.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
transcriptional regulator, AraC family
SCN18_14_9_16_R4_B_scaffold_753_3
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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893..1297
DNA (405bp) protein (135aa)
glyoxalase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036CA356
Glyoxalase {ECO:0000313|EMBL:KAJ35763.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Glyoxalase/bleomycin resistance protein/dioxygenase
SCN18_14_9_16_R4_B_scaffold_753_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1349..1555
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000378EB07
Membrane protein {ECO:0000313|EMBL:KGE80335.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_753_5
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1599..3428)
DNA (1830bp) protein (610aa)
UPI0003D00745 related cluster n=1 Tax=unknown RepID=UPI0003D00745
Uncharacterized protein {ECO:0000313|EMBL:GAO39115.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_753_6
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3617..4006
DNA (390bp) protein (130aa)
Ferredoxin n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML39_9SPHN
Ferredoxin {ECO:0000313|EMBL:CCW16327.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_753_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4180..5130
DNA (951bp) protein (317aa)
Putative sensory box sensor histidine kinase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BZP8_HYPNA
Putative sensory box sensor histidine kinase {ECO:0000313|EMBL:KCZ98817.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
putative sensory box sensor histidine kinase
SCN18_14_9_16_R4_B_scaffold_753_8
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5274..5657
DNA (384bp) protein (128aa)
PRC-barrel domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4Z6_SPHWW
PRC-barrel domain-containing protein
PRC-barrel domain protein {ECO:0000313|EMBL:ABQ67362.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_753_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5661..6299)
DNA (639bp) protein (213aa)
Putative outer membrane protein n=1 Tax=Sphingobium sp. AP49 RepID=J2L4Q9_9SPHN
Putative outer membrane protein {ECO:0000313|EMBL:EJK82366.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_753_10
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6561..7421
DNA (861bp) protein (287aa)
Ku family containing protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036C7DD9
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
Ku protein
SCN18_14_9_16_R4_B_scaffold_753_11
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7423..9870
DNA (2448bp) protein (816aa)
lig; ATP-dependent DNA ligase (EC:6.5.1.1)
ATP-dependent DNA ligase {ECO:0000313|EMBL:BAI96124.1}; EC=6.5.1.1 {ECO:0000313|EMBL:BAI96124.1};; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036874CA
SCN18_14_9_16_R4_B_scaffold_753_12
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9962..10405
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y458_9SPHN
MarR family transcriptional regulator {ECO:0000313|EMBL:KCZ88851.1}; TaxID=1280950 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas johnsonii MHS-2.;"
MarR family transcriptional regulator
SCN18_14_9_16_R4_B_scaffold_753_13
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10402..11802)
DNA (1401bp) protein (467aa)
MFS transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB4D
Putative MFS permease {ECO:0000313|EMBL:KFL44698.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
major facilitator family transporter
SCN18_14_9_16_R4_B_scaffold_753_14
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11802..14018)
DNA (2217bp) protein (739aa)
Putative TonB-dependent receptor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIB5_9SPHN
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAD47802.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
TonB-dependent receptor
SCN18_14_9_16_R4_B_scaffold_753_15
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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14185..14910
DNA (726bp) protein (242aa)
Disulfide-bond oxidoreductase YfcG (EC:1.8.4.-)
Glutathione S-transferase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYQ9_9SPHN
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_14_9_16_R4_B_scaffold_753_16
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14933..15856)
DNA (924bp) protein (308aa)
Putative gluconolactonase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHY3_9SPHN
Putative gluconolactonase {ECO:0000313|EMBL:GAD47805.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
gluconolactonase
SCN18_14_9_16_R4_B_scaffold_753_17
unknown

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16249..16488
DNA (240bp) protein (80aa)

This feature has no annotations

SCN18_14_9_16_R4_B_scaffold_753_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16527..19241
DNA (2715bp) protein (905aa)
Cation-transporting ATPase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IH96_AZOC5
cation-transporting ATPase
Cation-transporting ATPase {ECO:0000313|EMBL:BAF86190.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCN18_14_9_16_R4_B_scaffold_753_19
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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19232..19537
DNA (306bp) protein (102aa)
SCN18_14_9_16_R4_B_scaffold_753_20
unknown

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19685..19966
DNA (282bp) protein (94aa)

This feature has no annotations

Displaying 20 items

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