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SCN18_14_9_16_R3_B_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 700 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R3_B_scaffold_4_1
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..2194)
DNA (2193bp) protein (731aa)
hypothetical protein n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B33F02
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAQ41720.1}; TaxID=313598 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter sp. MED152.;"
SCN18_14_9_16_R3_B_scaffold_4_2
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2448..3848)
DNA (1401bp) protein (467aa)
Putative uncharacterized protein id=4169443 bin=GWF2_Bacteroidetes_43_63 species=unknown genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_14_9_16_R3_B_scaffold_4_3
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3860..6433)
DNA (2574bp) protein (858aa)
TonB-dependent receptor n=1 Tax=Niabella soli DSM 19437 RepID=H1NV97_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17916.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCN18_14_9_16_R3_B_scaffold_4_4
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6553..11292)
DNA (4740bp) protein (1580aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB14_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01361.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_14_9_16_R3_B_scaffold_4_5
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11484..11684)
DNA (201bp) protein (67aa)
Marine sediment metagenome DNA, contig: S06H3_L02964 {ECO:0000313|EMBL:GAI07108.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCN18_14_9_16_R3_B_scaffold_4_6
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11749..15201)
DNA (3453bp) protein (1151aa)
CHU large protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J5X5_9FLAO
CHU large protein {ECO:0000313|EMBL:EAZ94991.1}; TaxID=391598 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteria bacterium BAL38.;"
PKD domain-containing protein
SCN18_14_9_16_R3_B_scaffold_4_7
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15358..16404
DNA (1047bp) protein (349aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Niabella soli DSM 19437 RepID=H1NV96_9SPHI
endonuclease
Endonuclease {ECO:0000313|EMBL:AHF16336.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCN18_14_9_16_R3_B_scaffold_4_8
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16520..17977
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000379E298
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ADB42332.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCN18_14_9_16_R3_B_scaffold_4_9
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18086..18757)
DNA (672bp) protein (224aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (T(6)A) formation in tRNA n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FUJ1_9FLAO
YrdC/Sua5 family protein
SCN18_14_9_16_R3_B_scaffold_4_10
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18794..19048)
DNA (255bp) protein (85aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1454006 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Siansivirga.;" source="Siansivirga zeaxanthinifaciens CC-SAMT-1.;"
translation factor (SUA5) n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B55E38
translation factor (SUA5)
SCN18_14_9_16_R3_B_scaffold_4_11
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19051..19911)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Nonlabens dokdonensis (strain DSM 17205 / KCTC 12402 / DSW-6) RepID=L7W9K2_NONDD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC78360.1}; TaxID=592029 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Nonlabens.;" source="Nonlabens dokdonensis (strain DSM 17205 / KCTC 12402 / DSW-6); (Donghaeana dokdonensis).;"
SCN18_14_9_16_R3_B_scaffold_4_12
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19880..20185)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Polaribacter sp. MED152 RepID=A2U151_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:AKA34744.1}; TaxID=516051 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Muricauda.;" source="Muricauda lutaonensis.;"
hypothetical protein
SCN18_14_9_16_R3_B_scaffold_4_13
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20189..20428)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GI78_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH53603.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
SCN18_14_9_16_R3_B_scaffold_4_14
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20443..21879)
DNA (1437bp) protein (479aa)
3-isopropylmalate dehydrogenase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AFK3_IGNAJ
leuB; 3-isopropylmalate dehydrogenase
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:AFH47760.1}; TaxID=945713 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae; Ignavibacterium.;" source="Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 /; Mat9-16).;"
SCN18_14_9_16_R3_B_scaffold_4_15
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21966..22889
DNA (924bp) protein (308aa)
HTH-type transcriptional activator CmpR n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7NJ41_9BACT
HTH-type transcriptional activator CmpR {ECO:0000313|EMBL:EMR01765.1}; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
transcriptional regulator, LysR family
SCN18_14_9_16_R3_B_scaffold_4_16
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23132..23815
DNA (684bp) protein (228aa)
3-oxoacyl-acyl-carrier-protein reductase {ECO:0000313|EMBL:EAY28166.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EAY28166.1};; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003646916
short-chain dehydrogenase/reductase
SCN18_14_9_16_R3_B_scaffold_4_17
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23821..24294
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Emiliania huxleyi CCMP1516 RepID=R1BYX1_EMIHU
Uncharacterized protein {ECO:0000313|EMBL:EOD14962.1, ECO:0000313|EnsemblProtists:EOD14962}; TaxID=280463 species="Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; Emiliania.;" source="Emiliania huxleyi CCMP1516.;"
SCN18_14_9_16_R3_B_scaffold_4_18
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24291..24560
DNA (270bp) protein (90aa)
TIGR03643 family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W3H1_9FLAO
hypothetical protein
Tax=CG_Paludi_01
SCN18_14_9_16_R3_B_scaffold_4_19
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24565..25683
DNA (1119bp) protein (373aa)
DNA photolyase FAD-binding protein n=1 Tax=Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) RepID=E6X7P7_CELAD
DNA photolyase fad-binding protein
DNA photolyase FAD-binding protein {ECO:0000313|EMBL:ADV50757.1}; TaxID=688270 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630).;"
SCN18_14_9_16_R3_B_scaffold_4_20
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25798..27279
DNA (1482bp) protein (494aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI0003809D1B
deoxyribodipyrimidine photolyase
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:AIZ42611.1}; TaxID=1348584 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga baltica 18.;"
SCN18_14_9_16_R3_B_scaffold_4_trna_6
unknown

Not on your lists

comp(27621..27694)
DNA (74bp)
transferRNA Pro
SCN18_14_9_16_R3_B_scaffold_4_trna_5
unknown

Not on your lists

comp(27823..27913)
DNA (91bp)
transferRNA Ser
SCN18_14_9_16_R3_B_scaffold_4_21
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28063..29490)
DNA (1428bp) protein (476aa)
chromosomal replication initiation protein n=1 Tax=Segetibacter koreensis RepID=UPI000379B90E
chromosomal replication initiator protein DnaA
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_14_9_16_R3_B_scaffold_4_22
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29631..30566)
DNA (936bp) protein (312aa)
5'-nucleotidase n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GL76_9SPHI
5'-nucleotidase {ECO:0000313|EMBL:KIC92577.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
metallophosphoesterase
SCN18_14_9_16_R3_B_scaffold_4_23
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30553..31302)
DNA (750bp) protein (250aa)
5'-Nucleotidase domain protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GPU5_9BACT
5'-nucleotidase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_14_9_16_R3_B_scaffold_4_24
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31403..31777
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003681497
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_14_9_16_R3_B_scaffold_4_25
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31883..33478
DNA (1596bp) protein (532aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037017E7
monooxygenase FAD-binding protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_14_9_16_R3_B_scaffold_4_26
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33583..34515
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003815188
Fe(3+)-transporting ATPase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_14_9_16_R3_B_scaffold_4_27
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34540..35874
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE27_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO44906.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCN18_14_9_16_R3_B_scaffold_4_28
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35816..35944
DNA (129bp) protein (43aa)
Displaying items 1-30 of 700 in total

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