ggKbase home page

SCN18_10_11_15_R4_B_scaffold_1235

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_B_scaffold_1235_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

318..1547
DNA (1230bp) protein (410aa)
UPI0003CF2E24 related cluster n=1 Tax=unknown RepID=UPI0003CF2E24
Uncharacterized protein {ECO:0000313|EMBL:EXL09482.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_1235_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1534..2853
DNA (1320bp) protein (440aa)
Glycosyl transferase, group 1 family protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60CF5_METCA
Uncharacterized protein {ECO:0000313|EMBL:EZQ13668.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
glycosyl transferase family protein
SCN18_10_11_15_R4_B_scaffold_1235_3
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2864..4189)
DNA (1326bp) protein (442aa)
Uncharacterized protein {ECO:0000313|EMBL:EZQ13672.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
Polysaccharide biosynthesis protein id=4824969 bin=GWC2_Nitrospirae-rel_56_14 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
polysaccharide biosynthesis protein
SCN18_10_11_15_R4_B_scaffold_1235_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4342..5685
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KN47_MESAW
Uncharacterized protein {ECO:0000313|EMBL:EZQ13670.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_1235_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5759..7234
DNA (1476bp) protein (492aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSZ1_RHITR
Uncharacterized protein {ECO:0000313|EMBL:CDX13647.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_1235_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7231..8031
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Actinoalloteichus spitiensis RepID=UPI000364B1BC
Glycosyl transferase, WecB/TagA/CpsF family {ECO:0000313|EMBL:CDX14337.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
WecB/TagA/CpsF family glycosyl transferase
SCN18_10_11_15_R4_B_scaffold_1235_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8036..9292)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000378E23E
glycosyl transferase family protein
Tax=BJP_08E140C01_10KDA_Chromatiales_49_130
SCN18_10_11_15_R4_B_scaffold_1235_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9379..11331)
DNA (1953bp) protein (651aa)
lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003493109
Uncharacterized protein {ECO:0000313|EMBL:EZQ13673.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
lipopolysaccharide biosynthesis protein
SCN18_10_11_15_R4_B_scaffold_1235_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11503..12315
DNA (813bp) protein (271aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
PREDICTED: pyrroline-5-carboxylate reductase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C0FD34
SCN18_10_11_15_R4_B_scaffold_1235_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12430..13185
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003614E54
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 {ECO:0000313|EMBL:CEJ10994.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
short-chain dehydrogenase/reductase SDR
SCN18_10_11_15_R4_B_scaffold_1235_11
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

13193..14722
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036FA669
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EIE48734.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
AMP-dependent synthetase/ligase
SCN18_10_11_15_R4_B_scaffold_1235_12
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14730..15527)
DNA (798bp) protein (266aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:BAI96197.1}; EC=1.1.1.100 {ECO:0000313|EMBL:BAI96197.1};; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000371FB36
SCN18_10_11_15_R4_B_scaffold_1235_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15524..16285)
DNA (762bp) protein (254aa)
short-chain dehydrogenase (EC:1.3.1.-)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035EF6A9
Uncharacterized protein {ECO:0000313|EMBL:EQA98418.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCN18_10_11_15_R4_B_scaffold_1235_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16282..18225)
DNA (1944bp) protein (648aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C7C72
branched-chain amino acid transport system / permease component family protein
Amino acid/amide ABC transporter membrane protein 2, HAAT family / amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:ABE36811.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCN18_10_11_15_R4_B_scaffold_1235_15
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18225..18911)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003694402
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KCV67049.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
branched chain amino acid ABC transporter ATP-binding protein
SCN18_10_11_15_R4_B_scaffold_1235_16
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18901..19179)
DNA (279bp) protein (93aa)
h16_A3662; ABC transporter ATPase (EC:3.6.3.22)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000377FC99
Tax=GWA2_Curvibacter_64_110_curated
Displaying 16 items

View Taxonomy