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SCN18_13_7_16_R2_B_Actinobacteria_71_7

In projects: SCN18_13_7_16_R2_B  |  scn18_genomes

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: SCN18_13_7_16_R2_B_UNK

Properties

Avg. coverage: 6.73 Longest contig: 10.20 Kbp Bin length: 2.61 Mbp GC content: 70.68 %
Contigs count: 1267 Features count: 3540 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 26 / 55 BSCG 28 / 51 ASCG 7 / 38

Description

Extracted from SCN18_13_7_16_R2_B_concoct_064

Displaying items 51-100 of 1267 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_13_7_16_R2_B_scaffold_22831
Species: SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9 (50%)
2 1238 bp 72.05 6.54 100.32
SCN18_13_7_16_R2_B_scaffold_10466
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
4 2177 bp 70.83 6.89 100.32
SCN18_13_7_16_R2_B_scaffold_22393
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1256 bp 73.65 8.24 100.32
SCN18_13_7_16_R2_B_scaffold_12105
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (66.67%)
3 1971 bp 73.82 7.76 100.30
SCN18_13_7_16_R2_B_scaffold_19760
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
3 1382 bp 72.36 7.60 100.29
SCN18_13_7_16_R2_B_scaffold_27993
Species: CN-SCN_Microbacterium_200x (50%)
2 1050 bp 76.19 7.14 100.29
SCN18_13_7_16_R2_B_scaffold_27411
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (50%)
2 1068 bp 71.54 6.74 100.28
SCN18_13_7_16_R2_B_scaffold_13546
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
4 1821 bp 69.91 8.40 100.28
SCN18_13_7_16_R2_B_scaffold_8167
Class: Actinobacteria (60%)
5 2573 bp 71.75 6.65 100.27
SCN18_13_7_16_R2_B_scaffold_25878
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (66.67%)
3 1119 bp 71.94 6.70 100.27
SCN18_13_7_16_R2_B_scaffold_24861
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1158 bp 74.44 7.64 100.26
SCN18_13_7_16_R2_B_scaffold_16697
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1565 bp 73.35 7.67 100.26
SCN18_13_7_16_R2_B_scaffold_16249
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (66.67%)
3 1595 bp 75.05 6.68 100.25
SCN18_13_7_16_R2_B_scaffold_8974
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (66.67%)
3 2418 bp 72.42 7.51 100.25
SCN18_13_7_16_R2_B_scaffold_23349
Species: SCNPILOT_EXPT_1000_BF_Microbacterium_69_10 (50%)
2 1215 bp 72.59 7.53 100.25
SCN18_13_7_16_R2_B_scaffold_6908
Order: Pseudonocardiales (80%)
5 2858 bp 73.09 5.88 100.25
SCN18_13_7_16_R2_B_scaffold_6502
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
3 2966 bp 70.80 6.63 100.24
SCN18_13_7_16_R2_B_scaffold_14672
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (66.67%)
3 1715 bp 67.23 7.78 100.23
SCN18_13_7_16_R2_B_scaffold_21580
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1296 bp 71.60 8.22 100.23
SCN18_13_7_16_R2_B_scaffold_10371
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (66.67%)
3 2191 bp 71.15 5.89 100.23
SCN18_13_7_16_R2_B_scaffold_19266
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1407 bp 65.60 5.01 100.21
SCN18_13_7_16_R2_B_scaffold_12739
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
3 1901 bp 70.70 6.39 100.21
SCN18_13_7_16_R2_B_scaffold_8657
Order: Pseudonocardiales (66.67%)
3 2470 bp 72.91 6.26 100.20
SCN18_13_7_16_R2_B_scaffold_17670
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
2 1503 bp 73.79 7.39 100.20
SCN18_13_7_16_R2_B_scaffold_17476
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1515 bp 72.28 6.83 100.20
SCN18_13_7_16_R2_B_scaffold_29202
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (50%)
2 1015 bp 69.16 6.80 100.20
SCN18_13_7_16_R2_B_scaffold_28885
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1024 bp 75.39 4.25 100.20
SCN18_13_7_16_R2_B_scaffold_26373
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1102 bp 73.41 7.35 100.18
SCN18_13_7_16_R2_B_scaffold_5449
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
4 3336 bp 70.74 6.74 100.18
SCN18_13_7_16_R2_B_scaffold_15012
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1689 bp 70.16 7.90 100.18
SCN18_13_7_16_R2_B_scaffold_25092
Species: SCNPILOT_CONT_500_BF_Actinomycetales_73_43 (50%)
2 1150 bp 72.96 6.91 100.17
SCN18_13_7_16_R2_B_scaffold_52216
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1150 bp 67.39 6.52 100.17
SCN18_13_7_16_R2_B_scaffold_24830
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (100%)
2 1159 bp 76.01 5.05 100.17
SCN18_13_7_16_R2_B_scaffold_24839
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1159 bp 72.82 6.73 100.17
SCN18_13_7_16_R2_B_scaffold_9463
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 2330 bp 71.89 6.95 100.17
SCN18_13_7_16_R2_B_scaffold_14109
Class: Actinobacteria (66.67%)
3 1764 bp 72.62 6.97 100.17
SCN18_13_7_16_R2_B_scaffold_13811
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1794 bp 73.41 7.61 100.17
SCN18_13_7_16_R2_B_scaffold_23531
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1207 bp 71.50 5.47 100.17
SCN18_13_7_16_R2_B_scaffold_23101
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1225 bp 72.16 9.18 100.16
SCN18_13_7_16_R2_B_scaffold_13032
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (100%)
2 1872 bp 69.82 5.85 100.16
SCN18_13_7_16_R2_B_scaffold_22162
Species: CN-SCN_Microbacterium_200x (50%)
2 1267 bp 69.06 5.92 100.16
SCN18_13_7_16_R2_B_scaffold_7944
Class: Actinobacteria (100%)
3 2615 bp 73.27 7.34 100.15
SCN18_13_7_16_R2_B_scaffold_21109
Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (100%)
2 1318 bp 74.05 5.92 100.15
SCN18_13_7_16_R2_B_scaffold_20845
Species: SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial (50%)
2 1330 bp 75.64 6.20 100.15
SCN18_13_7_16_R2_B_scaffold_20058
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1369 bp 67.57 6.68 100.15
SCN18_13_7_16_R2_B_scaffold_19664
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
2 1387 bp 69.94 7.03 100.14
SCN18_13_7_16_R2_B_scaffold_10335
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (66.67%)
3 2196 bp 65.71 6.28 100.14
SCN18_13_7_16_R2_B_scaffold_15464
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1651 bp 71.59 6.18 100.12
SCN18_13_7_16_R2_B_scaffold_15022
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1687 bp 72.85 5.96 100.12
SCN18_13_7_16_R2_B_scaffold_14564
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1723 bp 68.83 6.62 100.12
Displaying items 51-100 of 1267 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.