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SCN18_13_7_16_R2_B_Actinobacteria_71_7

In projects: SCN18_13_7_16_R2_B  |  scn18_genomes

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Description

Extracted from SCN18_13_7_16_R2_B_concoct_064

Displaying items 101-150 of 1267 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_13_7_16_R2_B_scaffold_13743
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
2 1801 bp 70.07 8.16 100.11
SCN18_13_7_16_R2_B_scaffold_13444
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
2 1831 bp 74.28 6.31 100.11
SCN18_13_7_16_R2_B_scaffold_11268
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 2068 bp 70.70 6.60 100.10
SCN18_13_7_16_R2_B_scaffold_28438
Species: SCNPILOT_CONT_1000_BF_Actinobacteria_69_20 (50%)
2 1037 bp 70.68 6.51 100.10
SCN18_13_7_16_R2_B_scaffold_28240
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1043 bp 72.96 4.75 100.10
SCN18_13_7_16_R2_B_scaffold_26171
Species: SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13 (50%)
2 1109 bp 74.03 4.46 100.09
SCN18_13_7_16_R2_B_scaffold_25674
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (100%)
2 1127 bp 71.52 6.52 100.09
SCN18_13_7_16_R2_B_scaffold_2145
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (100%)
7 6858 bp 68.80 7.11 100.09
SCN18_13_7_16_R2_B_scaffold_24886
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1157 bp 68.11 3.89 100.09
SCN18_13_7_16_R2_B_scaffold_24502
Species: SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial (100%)
2 1172 bp 69.28 7.42 100.09
SCN18_13_7_16_R2_B_scaffold_23651
Species: SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9 (66.67%)
3 1202 bp 69.88 6.74 100.08
SCN18_13_7_16_R2_B_scaffold_23376
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1214 bp 74.71 5.93 100.08
SCN18_13_7_16_R2_B_scaffold_21942
Species: SCNPILOT_EXPT_750_BF_Actinomycetales_70_150 (100%)
2 1277 bp 73.92 7.05 100.08
SCN18_13_7_16_R2_B_scaffold_7687
Species: Microbacterium sp. MRS-1 (50%)
2 2668 bp 67.43 6.35 100.08
SCN18_13_7_16_R2_B_scaffold_20712
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (50%)
2 1337 bp 71.43 6.06 100.08
SCN18_13_7_16_R2_B_scaffold_20502
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1346 bp 72.14 6.13 100.07
SCN18_13_7_16_R2_B_scaffold_19770
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1382 bp 75.54 5.75 100.07
SCN18_13_7_16_R2_B_scaffold_6974
Species: CN-SCN_Microbacterium_18x (100%)
2 2839 bp 69.39 6.45 100.07
SCN18_13_7_16_R2_B_scaffold_19017
Class: Actinobacteria (50%)
4 1421 bp 71.64 6.54 100.07
SCN18_13_7_16_R2_B_scaffold_16788
Species: SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9 (50%)
2 1559 bp 71.52 6.45 100.06
SCN18_13_7_16_R2_B_scaffold_5869
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (75%)
4 3172 bp 71.50 6.76 100.06
SCN18_13_7_16_R2_B_scaffold_11357
Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (100%)
2 2057 bp 68.01 7.00 100.05
SCN18_13_7_16_R2_B_scaffold_18368
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241 (100%)
1 1461 bp 69.88 7.08 100.00
SCN18_13_7_16_R2_B_scaffold_26409
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
1 1101 bp 66.12 10.35 100.00
SCN18_13_7_16_R2_B_scaffold_17630
Species: SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial (100%)
2 1506 bp 67.33 6.97 100.00
SCN18_13_7_16_R2_B_scaffold_10127
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (100%)
2 2229 bp 75.24 6.66 100.00
SCN18_13_7_16_R2_B_scaffold_16718
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (100%)
2 1563 bp 67.95 6.91 100.00
SCN18_13_7_16_R2_B_scaffold_14700
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
1 1713 bp 69.70 7.97 100.00
SCN18_13_7_16_R2_B_scaffold_21057
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
1 1320 bp 66.59 8.41 100.00
SCN18_13_7_16_R2_B_scaffold_17438
Species: SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13 (50%)
2 1518 bp 67.98 7.21 100.00
SCN18_13_7_16_R2_B_scaffold_22109
Species: SCNpilot_BF_INOC_Solirubrobacterales_68_7 (100%)
1 1269 bp 75.73 7.92 100.00
SCN18_13_7_16_R2_B_scaffold_16997
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 1545 bp 74.11 7.67 100.00
SCN18_13_7_16_R2_B_scaffold_25491
Species: Microbacterium sp. oral taxon 186 (50%)
2 1134 bp 66.40 5.42 100.00
SCN18_13_7_16_R2_B_scaffold_17222
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
1 1530 bp 72.22 7.25 100.00
SCN18_13_7_16_R2_B_scaffold_18017
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
1 1482 bp 69.84 8.00 100.00
SCN18_13_7_16_R2_B_scaffold_19455
Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (50%)
2 1398 bp 74.18 5.79 100.00
SCN18_13_7_16_R2_B_scaffold_21125
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (100%)
1 1317 bp 71.60 7.63 100.00
SCN18_13_7_16_R2_B_scaffold_26310
Species: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53 (100%)
1 1104 bp 70.02 5.43 100.00
SCN18_13_7_16_R2_B_scaffold_26063
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (100%)
1 1113 bp 70.89 7.82 100.00
SCN18_13_7_16_R2_B_scaffold_11316
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
1 2061 bp 72.68 5.39 100.00
SCN18_13_7_16_R2_B_scaffold_14034
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (50%)
2 1773 bp 68.53 4.82 100.00
SCN18_13_7_16_R2_B_scaffold_16857
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241 (100%)
1 1554 bp 71.88 7.82 100.00
SCN18_13_7_16_R2_B_scaffold_7344
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
1 2748 bp 71.54 7.31 100.00
SCN18_13_7_16_R2_B_scaffold_3399
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
4 4633 bp 69.26 8.39 99.98
SCN18_13_7_16_R2_B_scaffold_7110
Species: Microbacterium ginsengisoli_SCNPILOT_CONT_1000_P_Microbacterium_71_138 (100%)
4 2806 bp 70.56 7.64 99.96
SCN18_13_7_16_R2_B_scaffold_9542
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (50%)
2 2317 bp 69.01 5.11 99.96
SCN18_13_7_16_R2_B_scaffold_10885
Species: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13 (100%)
1 2119 bp 72.72 6.80 99.95
SCN18_13_7_16_R2_B_scaffold_11170
Class: Actinobacteria (66.67%)
3 2080 bp 72.93 5.77 99.95
SCN18_13_7_16_R2_B_scaffold_11992
Species: SCNPILOT_CONT_1000_P_Pseudonocardia_72_23 (100%)
1 1984 bp 66.63 6.28 99.95
SCN18_13_7_16_R2_B_scaffold_12593
Species: Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x (100%)
1 1918 bp 67.67 7.43 99.95
Displaying items 101-150 of 1267 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.