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SCN18_30_10_14_R2_B_scaffold_5815

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_5815_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..311
DNA (309bp) protein (103aa)
ABC transporter, membrane spanning protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CGV6_AGRT5
ABC transporter permease
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:AAK88848.1}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCN18_30_10_14_R2_B_scaffold_5815_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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354..1340
DNA (987bp) protein (329aa)
sulfonate ABC transporter substrate-binding protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003808AFB
Putative sulfonate/nitrate transport system substrate-binding protein {ECO:0000313|EMBL:CDN95354.1}; Flags: Precursor;; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
putative sulfonate/nitrate transport system substrate-binding protein
SCN18_30_10_14_R2_B_scaffold_5815_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1410..2165
DNA (756bp) protein (252aa)
Dehydrogenase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CVC9_AGRT5
dehydrogenase
Dehydrogenase {ECO:0000313|EMBL:AAK88850.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCN18_30_10_14_R2_B_scaffold_5815_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2177..2875
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000362D098
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY66016.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCN18_30_10_14_R2_B_scaffold_5815_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2930..3721
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LEL4_AGRSH
Strain MEJ076 contig_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ04100.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_5815_6
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3633..4841)
DNA (1209bp) protein (403aa)
ABC transporter (EC:3.6.3.30)
ABC transporter, ATP-binding protein n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GPL5_9FUSO
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEY33970.1}; TaxID=596323 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Leptotrichia.;" source="Leptotrichia goodfellowii F0264.;"
SCN18_30_10_14_R2_B_scaffold_5815_7
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4838..5077)
DNA (240bp) protein (80aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I463_9BRAD
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EJN14463.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
binding-protein-dependent transport system inner membrane protein
SCN18_30_10_14_R2_B_scaffold_5815_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5588..6439)
DNA (852bp) protein (284aa)
ABC transporter permease n=1 Tax=Rhizobium leguminosarum RepID=UPI000381F15F
ABC spermidine/putrescine transporter permease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCN18_30_10_14_R2_B_scaffold_5815_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6528..7556)
DNA (1029bp) protein (343aa)
Spermidine/putrescine-binding periplasmic protein n=1 Tax=Herbaspirillum sp. YR522 RepID=J3CC48_9BURK
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:EJN02704.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
SCN18_30_10_14_R2_B_scaffold_5815_10
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7587..8849)
DNA (1263bp) protein (421aa)
Peptidase M20 n=1 Tax=Pseudomonas sp. CFII64 RepID=S6ITP1_9PSED
Peptidase M20 {ECO:0000313|EMBL:EPJ84738.1}; TaxID=911242 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CFII64.;"
Peptidase M20, or acetylornithine deacetylase
SCN18_30_10_14_R2_B_scaffold_5815_11
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9116..10420)
DNA (1305bp) protein (435aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VY80_9RHIZ
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJN05200.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
FAD dependent oxidoreductase
SCN18_30_10_14_R2_B_scaffold_5815_12
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10489..11424)
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=2 Tax=Rhizobium fredii RepID=G9A3I1_RHIFH
ampr3; LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCE97929.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Displaying 12 items

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