ggKbase home page

SCN18_30_10_14_R5_P_scaffold_1336

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R5_P_scaffold_1336_1
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..147
DNA (147bp) protein (49aa)
ureAB; bifunctional urease subunit gamma/beta (EC:3.5.1.5)
Urease {ECO:0000256|SAAS:SAAS00108089}; EC=3.5.1.5 {ECO:0000256|SAAS:SAAS00108089, ECO:0000313|EMBL:CAL79528.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Urease gamma (N-terminal) and beta (C-terminal) subunits n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z052_BRASO
SCN18_30_10_14_R5_P_scaffold_1336_2
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

167..1879
DNA (1713bp) protein (571aa)
urease subunit alpha (EC:3.5.1.5)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Urease subunit alpha n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JUH5_HYPDA
SCN18_30_10_14_R5_P_scaffold_1336_3
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1884..2531
DNA (648bp) protein (216aa)
Urease accessory protein UreG n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JUH4_HYPDA
urease accessory protein UreG
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCN18_30_10_14_R5_P_scaffold_1336_4
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2528..3403
DNA (876bp) protein (292aa)
Urease accessory protein UreD n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J6C2_HYPSM
ureD; urease accessory protein ureD
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_30_10_14_R5_P_scaffold_1336_5
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3456..4058
DNA (603bp) protein (201aa)
protein hupE n=1 Tax=Rhizobium leguminosarum RepID=UPI000373DB48
Protein HupE {ECO:0000313|EMBL:CDX24914.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
HupE/UreJ protein
SCN18_30_10_14_R5_P_scaffold_1336_6
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4297..5091
DNA (795bp) protein (265aa)
XRE family transcriptional regulator n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFY3_9RHIZ
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:AHB48854.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_30_10_14_R5_P_scaffold_1336_7
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5415..6944
DNA (1530bp) protein (510aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CV95_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGF68438.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
peptide ABC transporter substrate-binding protein
SCN18_30_10_14_R5_P_scaffold_1336_8
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7056..7982
DNA (927bp) protein (309aa)
Polysaccharide deacetylase family protein, putative n=1 Tax=alpha proteobacterium BAL199 RepID=A8TW85_9PROT
Polysaccharide deacetylase family protein, putative {ECO:0000313|EMBL:EDP63279.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative polysaccharide deacetylase family protein
SCN18_30_10_14_R5_P_scaffold_1336_9
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8033..8779
DNA (747bp) protein (249aa)
Asp/Glu racemase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12G30_POLSJ
Uncharacterized protein {ECO:0000313|EMBL:KKN97256.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Asp/Glu racemase
SCN18_30_10_14_R5_P_scaffold_1336_10
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8790..9542)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003795FAB
Uncharacterized protein {ECO:0000313|EMBL:KKN97256.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Asp/Glu/hydantoin racemase
SCN18_30_10_14_R5_P_scaffold_1336_11
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9583..10599)
DNA (1017bp) protein (339aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89Q97_BRADU
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAC48498.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCN18_30_10_14_R5_P_scaffold_1336_12
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10596..11507)
DNA (912bp) protein (304aa)
Candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYT1_RAMTT
dipeptide/oligopeptide ABC transporter
Candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component {ECO:0000313|EMBL:AEG94448.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Displaying 12 items

View Taxonomy