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SCNpilot_expt_1000_bf_scaffold_1534_curated

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1534_curated_1
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..663
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZA7_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45130.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_2
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

682..1125
DNA (444bp) protein (148aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
DNA polymerase IV n=1 Tax=Acidovorax sp. KKS102 RepID=K0I827_9BURK
DNA-directed DNA polymerase
SCNpilot_expt_1000_bf_scaffold_1534_curated_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1235..2116
DNA (882bp) protein (294aa)
Transcription regulator protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1T0_9BURK
transcriptional regulator
Transcription regulator protein {ECO:0000313|EMBL:AFU45129.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2148..2399)
DNA (252bp) protein (84aa)
Thiamine pyrophosphate protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HQ41_9BURK
thiamine pyrophosphate protein
Thiamine pyrophosphate protein {ECO:0000313|EMBL:AFU45128.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_5
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3081..3998
DNA (918bp) protein (306aa)
Uncharacterized protein id=12551323 bin=BDI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BDI organism_group=Betaproteobacteria
Uncharacterised protein {ECO:0000313|EMBL:CRE28015.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3851..5077)
DNA (1227bp) protein (409aa)
Class I and II aminotransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HW86_9BURK
class I and II aminotransferase
Class I and II aminotransferase {ECO:0000313|EMBL:AFU45127.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_7
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5074..5991)
DNA (918bp) protein (306aa)
Family 3 extracellular solute-binding protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I825_9BURK
family 3 extracellular solute-binding protein
Family 3 extracellular solute-binding protein {ECO:0000313|EMBL:AFU45126.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6042..7238)
DNA (1197bp) protein (399aa)
Fad dependent oxidoreductase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZA6_9BURK
fad dependent oxidoreductase
Fad dependent oxidoreductase {ECO:0000313|EMBL:AFU45125.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_9
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7262..8809)
DNA (1548bp) protein (516aa)
Aldehyde dehydrogenase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1S7_9BURK
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000313|EMBL:AFU45124.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_10
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8760..9566)
DNA (807bp) protein (269aa)
UPI0003CE2A97 related cluster n=1 Tax=unknown RepID=UPI0003CE2A97
Uncharacterized protein {ECO:0000313|EMBL:ESW67249.1}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_11
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9725..9955
DNA (231bp) protein (77aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0HQ37_9BURK
LysR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_1000_bf_scaffold_1534_curated_12
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10027..10716
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I821_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45121.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_13
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10734..11588)
DNA (855bp) protein (285aa)
IclR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002376326
IclR family transcriptional regulator
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_1534_curated_14
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12987..13859
DNA (873bp) protein (291aa)
ABC transporter permease n=1 Tax=Acidovorax radicis RepID=UPI0002376324
binding-protein-dependent transport systems inner membrane component; K02054 putative spermidine/putrescine transport system permease protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_1000_bf_scaffold_1534_curated_15
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13865..14659
DNA (795bp) protein (265aa)
ABC transporter permease n=1 Tax=Acidovorax radicis RepID=UPI0002376323
ABC transporter permease {ECO:0000313|EMBL:KJA10238.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
ABC transporter, permease protein
SCNpilot_expt_1000_bf_scaffold_1534_curated_16
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14660..14971
DNA (312bp) protein (104aa)
ferredoxin n=1 Tax=Acidovorax radicis RepID=UPI0002376322
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_1000_bf_scaffold_1534_curated_17
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14968..16368
DNA (1401bp) protein (467aa)
(2Fe-2S)-binding protein n=1 Tax=Acidovorax radicis RepID=UPI0002376321
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KJA10240.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
BFD-like protein (2Fe-2S)-binding protein
SCNpilot_expt_1000_bf_scaffold_1534_curated_18
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16616..17470
DNA (855bp) protein (285aa)
FAD dependent oxidoreductase; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
FAD-dependent oxidoreductase n=1 Tax=Acidovorax radicis RepID=UPI0002376320
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KJA10293.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_19
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17521..18591
DNA (1071bp) protein (357aa)
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Acidovorax radicis RepID=UPI000237631F
family 1 extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_1534_curated_20
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18796..19779
DNA (984bp) protein (328aa)
Class I cytochrome c n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1S4_9BURK
class I cytochrome c
Class I cytochrome c {ECO:0000313|EMBL:AFU45119.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_21
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19926..20690)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HQ32_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45118.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_22
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20695..21171)
DNA (477bp) protein (159aa)
Globin n=1 Tax=Acidovorax sp. KKS102 RepID=K0HW79_9BURK
globin
Globin {ECO:0000313|EMBL:AFU45117.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_23
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21182..22120)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I819_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45116.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_24
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22241..23032)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZA0_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45115.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_25
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23043..23618)
DNA (576bp) protein (192aa)
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1S1_9BURK
ECF subfamily RNA polymerase sigma-24 subunit
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:AFU45114.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_26
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23840..24265
DNA (426bp) protein (142aa)
Cytochrome c class I n=1 Tax=Acidovorax sp. KKS102 RepID=K0HQ28_9BURK
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:AFU45113.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_27
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24281..25507)
DNA (1227bp) protein (409aa)
L-lactate dehydrogenase (Cytochrome) n=1 Tax=Acidovorax sp. KKS102 RepID=K0HW77_9BURK
L-lactate dehydrogenase (cytochrome)
L-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:AFU45112.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_28
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25577..27865)
DNA (2289bp) protein (763aa)
PAS/PAC sensor-containing diguanylate cyclase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I815_9BURK
PAS/PAC sensor-containing diguanylate cyclase
PAS/PAC sensor-containing diguanylate cyclase {ECO:0000313|EMBL:AFU45111.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1534_curated_29
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27950..30331)
DNA (2382bp) protein (794aa)
Penicillin-binding protein 1C n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZ97_9BURK
Penicillin-binding protein 1C {ECO:0000313|EMBL:AFU45110.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
penicillin-binding protein 1C
SCNpilot_expt_1000_bf_scaffold_1534_curated_30
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30350..31153)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1R8_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45109.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Displaying items 1-30 of 32 in total

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