ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4803_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4803_curated_1
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..128
DNA (126bp) protein (42aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI00023751C2
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_1000_bf_scaffold_4803_curated_2
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

517..2289
DNA (1773bp) protein (591aa)
5'-nucleotidase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HVI5_9BURK
5'-nucleotidase {ECO:0000313|EMBL:AFU44827.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
5'-nucleotidase
SCNpilot_expt_1000_bf_scaffold_4803_curated_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2430..3362)
DNA (933bp) protein (311aa)
Smr protein/MutS2 n=1 Tax=Acidovorax sp. KKS102 RepID=K0HPA0_9BURK
Smr protein/MutS2
Smr protein/MutS2 {ECO:0000313|EMBL:AFU44828.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_4803_curated_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3359..4072)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0Y7_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44829.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_4803_curated_5
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4161..4625
DNA (465bp) protein (155aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYD9_9BURK
FKBP-type peptidylprolyl isomerase
SCNpilot_expt_1000_bf_scaffold_4803_curated_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4625..5605
DNA (981bp) protein (327aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I783_9BURK
SCNpilot_expt_1000_bf_scaffold_4803_curated_7
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5734..6465)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HVJ0_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44832.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_4803_curated_8
unknown

Not on your lists

comp(6811..7215)
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4803_curated_9
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7346..7561
DNA (216bp) protein (72aa)
threonine dehydratase (EC:4.3.1.19)
Threonine dehydratase {ECO:0000313|EMBL:AFU44833.1}; EC=4.3.1.19 {ECO:0000313|EMBL:AFU44833.1};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Threonine dehydratase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HPA3_9BURK
SCNpilot_expt_1000_bf_scaffold_4803_curated_10
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7594..8910
DNA (1317bp) protein (439aa)
seryl-tRNA ligase (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Serine--tRNA ligase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0Z1_9BURK
SCNpilot_expt_1000_bf_scaffold_4803_curated_11
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9210..10433
DNA (1224bp) protein (408aa)
Phage integrase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I7Q0_9BURK
phage integrase
Phage integrase {ECO:0000313|EMBL:AFU44976.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_4803_curated_12
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10719..11105
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HVW7_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44977.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_4803_curated_13
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11109..11675
DNA (567bp) protein (189aa)
DNA repair protein radc; K03630 DNA repair protein RadC id=5082453 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_1000_bf_scaffold_4803_curated_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11832..12050
DNA (219bp) protein (73aa)
Phage transcriptional regulator, AlpA n=1 Tax=Acidovorax sp. KKS102 RepID=K0I7Q4_9BURK
phage transcriptional regulator AlpA
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_4803_curated_15
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12047..12346
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HVX2_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_4803_curated_16
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12343..13287
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HPP4_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44983.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_4803_curated_17
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13277..14863
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1A0_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44984.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_4803_curated_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15166..15708
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J4A5_COMT2
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_4803_curated_19
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17004..17567
DNA (564bp) protein (188aa)
Putative phage-related protein n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5R8A2_9RHOO
Putative phage-related protein {ECO:0000313|EMBL:EGK73360.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
SCNpilot_expt_1000_bf_scaffold_4803_curated_20
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18060..19112
DNA (1053bp) protein (351aa)
selenophosphate synthetase (EC:2.7.9.3)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Selenide, water dikinase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HVX6_9BURK
SCNpilot_expt_1000_bf_scaffold_4803_curated_21
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19112..20218
DNA (1107bp) protein (369aa)
tRNA 2-selenouridine synthase {ECO:0000256|HAMAP-Rule:MF_01622, ECO:0000256|SAAS:SAAS00035454}; EC=2.9.1.- {ECO:0000256|HAMAP-Rule:MF_01622, ECO:0000256|SAAS:SAAS00035457};; Selenophosphate-dependent tRNA 2-selenouridine synthase {ECO:0000256|HAMAP-Rule:MF_01622}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
tRNA 2-selenouridine synthase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HPQ0_9BURK
tRNA 2-selenouridine synthase
SCNpilot_expt_1000_bf_scaffold_4803_curated_22
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20222..20761)
DNA (540bp) protein (180aa)
histidine kinase n=1 Tax=Acidovorax radicis RepID=UPI000237551F
multi-sensor signal transduction histidine kinase
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_1000_bf_scaffold_4803_curated_23
unknown

Not on your lists

21059..21313
DNA (255bp) protein (85aa)

This feature has no annotations

Displaying 23 items

View Taxonomy